RNA id: AMCG00015138


Basic Information

Item Value
RNA id AMCG00015138
length 1323
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00015138
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2905065 ~ 2910414 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgggGGCAGGCACGGTCTCCTCCTCAGCAGCCTTTTCATGTGTTGCTGAGGAGAGACAGCGGATGTGTGCCTGGTTGCCGGGGCTGAAGCCATCCCCAGCAACGGAGGGGGACATTCCGCCCTCTCTGCCATCTGCGGGGGACCTCCTGCCACTCCCACCTCCGCCCTCTGAGGTGGAACTCCGGCCGCTTTTGCCTCAGCAGCCTGAGGAGGCTGACTTTCCGGAGCTCGAGAGGGAAGTCAGCCTGCTGCTGCCGCCACCCGGTGATGCCGCGCCCGCACCGCCTGAGGAAGccagcctgctgctgctgccgcctcCCGGGGATGACGCGCCCACACCGCCCAGGGTTGccagcctgctgctgctgctgccacccGGGGACGAAGAACCAGTGTCGTGGCTGCTACTGTGCCCTGAGGGGGCACCACCACTGCCAGGGAGATTTATCTCACCCGGAGAGTGTTCGGACCTCCCTTTGTGTTCCAATGCGACGCTGGTGGTGGGAGGGAAAGAGAGTGGACCATCACAGCACAGCGCACGCAGaaataCTCCACTGGAGCTACAATCGAATCAACCCCTCCCCTTCAGGGAGCGGTGGGAGGAGTTAGTTGCTATGGAGACGGAGGCTCCACCAATCAGCCAGGAGAAGGCTGGCAGCCCTGCTGTAGGGGGCGGGGCCATGGACATGGACACAAAGGGGCTGGAGTCTGGCAGCCTTAAAGGGCCAGTCCAGAGTAAGCGCCACCCGGCGGAGTACGAGGCGGCGGTGCTGGGCGACGCACTGTTCGCCTGCTATGTGTGCGACCGGCCCTTCCCATCCTCCCGCGAGCTGCTGGCTCACCAGCGCGCTCACACGGACCGTACGCCCTTCCGCTGCCCCGTGTGTGGCGCTGCCTTCCCCCGCTCCTCTGAGCTCACCCTGCACAAGCGGGCACACTTTGGCCAGGCTGGCTATGCCTGCGCTGACTGCGGCAAAGCCTGCAAGACGCTGACCCTGCTTCGCTACCACCGACGCACCCACACCGGCGAGCGGCCCTACTGCTGCCCCCGCTGCCCCCGCCGCTTTAGCCAGTCCTCGGGTCTCCACCGCCACCTGCTCACCCATGcccaggaggaggaggagggGCGCCCACAGTGCTACCGCAGCAACAACTGGAACTGCAAACACAACAACTCCAGCAAAAGTCTCCCGAACCTCAGCTACACAAAGAGCCCCTGGGATTGGAGGCACAAGCGCTGTATGAACCACAACAACATGACCTGCAGCTTCAACTTCAGCCACAAGAAGCCCTGGAACTGCAACCACCGCAACAACAACTAG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119422 lncRNA downstream 29823 2874107 ~ 2875242 (-) False AMCG00015140
TU119306 lncRNA downstream 162463 2742318 ~ 2742602 (-) True G95675
TU119283 lncRNA downstream 207242 2697252 ~ 2697823 (-) True G95653
TU119259 lncRNA downstream 227936 2676924 ~ 2677129 (-) True G95637
TU119258 lncRNA downstream 228386 2676439 ~ 2676679 (-) True G95636
TU119436 lncRNA upstream 25880 2936294 ~ 2939095 (-) True G95780
TU119434 lncRNA upstream 32673 2943087 ~ 2945852 (-) True G95778
TU119442 lncRNA upstream 49921 2960335 ~ 2963345 (-) True G95786
TU119456 lncRNA upstream 83260 2993674 ~ 2994155 (-) True G95798
TU119476 lncRNA upstream 215017 3125431 ~ 3127592 (-) True G95814
AMCG00015137 mRNA downstream 1433 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015135 mRNA downstream 13438 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015140 mRNA downstream 26073 2875186 ~ 2878992 (-) True AMCG00015140
AMCG00015129 mRNA downstream 60552 2836730 ~ 2844513 (-) True AMCG00015129
AMCG00015130 mRNA downstream 70649 2830586 ~ 2834416 (-) True AMCG00015130
AMCG00015139 mRNA upstream 5574 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015136 mRNA upstream 15071 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015144 mRNA upstream 90402 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015154 mRNA upstream 325091 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015153 mRNA upstream 331696 3242110 ~ 3247588 (-) True AMCG00015153
TU119414 other downstream 13369 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 88998 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 234821 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 554015 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 767613 2136420 ~ 2137452 (-) True G95472
TU119447 other upstream 67783 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 275755 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 286007 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 439465 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 694189 3604603 ~ 3607192 (-) False AMCG00015164

Expression Profile