RNA id: TU119422


Basic Information

Item Value
RNA id TU119422
length 850
lncRNA type sense_over
GC content 0.43
exon number 3
gene id AMCG00015140
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2874107 ~ 2878992 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCAGCAAAAGATGCTGTCCATCTTATCCACGCGATCCCGCATGAACCTGGAGTAGTCACAGAAGTGTCTACAGGATAATGCGTGGAATTTCAACAGAGCCTCACAGATCTTCACCCAGCTACGgCTCAAAGGAAGATCCCAGATGTGGCTTTCAAGTGAAGAGGGTGTGagagtgatggagagagagagacagatgcgATGATATCTCTGCAGTGAAGATCCCCTTTATGAAGACCCTCTCTCTTTTGATCCCTTTTCCCTGCTTTGATACTCCCACAGAAGCCCCACTGCACCCCGGCCCCTCAGtgggtctctgtgtgtatattaCCCTCGGCAGTCTGTATTGTGTTAAGTTGGCTGCACTAAACATAGCAGTGTccccacacaaaaaaacagaaatataggACACAGGAAGGAGCAGTACACAAAAAGAATAACTGGGGGCCAGAACTGTCACAGAGAggtacatgtaaaataatgtttcaaagTAGCAAAGTAGCAAAGTGAAAATGGCAGTGGAGGGCAGCAGGCTTTTCCACTACAATAACAATGACGGATCAGTCTATTACAAACCTTCCCTTACCAACTATGAAACCAAATATTTTGTGGGTGGAGAATCAATAAGAGCTTATGCAAACAAATCAGTGGTAATAGAATAAGGAGACGTACATATCCAAGACAAACCCCACCGGGatggaaacattattttacatgtaccTCTCTGTGACAGTTCTGGCCCACAGATAGGAAGGAGCAGTACATGCAAAGAATAACTTGtgtcctatatatttttttcacatttgaaacaCTTGATTTGATCATATATTACTAGTTGTTTAGTGCAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119306 lncRNA downstream 131505 2742318 ~ 2742602 (-) True G95675
TU119283 lncRNA downstream 176284 2697252 ~ 2697823 (-) True G95653
TU119259 lncRNA downstream 196978 2676924 ~ 2677129 (-) True G95637
TU119258 lncRNA downstream 197428 2676439 ~ 2676679 (-) True G95636
TU119226 lncRNA downstream 224534 2648459 ~ 2649573 (-) True G95612
TU119436 lncRNA upstream 61052 2936294 ~ 2939095 (-) True G95780
TU119434 lncRNA upstream 67845 2943087 ~ 2945852 (-) True G95778
TU119442 lncRNA upstream 85093 2960335 ~ 2963345 (-) True G95786
TU119456 lncRNA upstream 118432 2993674 ~ 2994155 (-) True G95798
TU119476 lncRNA upstream 250189 3125431 ~ 3127592 (-) True G95814
AMCG00015129 mRNA downstream 29594 2836730 ~ 2844513 (-) True AMCG00015129
AMCG00015130 mRNA downstream 39691 2830586 ~ 2834416 (-) True AMCG00015130
AMCG00015131 mRNA downstream 49431 2819872 ~ 2824676 (-) True AMCG00015131
AMCG00015132 mRNA downstream 65391 2771667 ~ 2808716 (-) True AMCG00015132
AMCG00015127 mRNA downstream 112403 2759997 ~ 2761704 (-) True AMCG00015127
AMCG00015135 mRNA upstream 12342 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015137 mRNA upstream 18081 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015138 mRNA upstream 29823 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015139 mRNA upstream 40746 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015136 mRNA upstream 50243 2925485 ~ 2928277 (-) True AMCG00015136
TU119334 other downstream 58040 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 203863 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 523057 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 736655 2136420 ~ 2137452 (-) True G95472
TU119027 other downstream 780869 2090529 ~ 2093238 (-) False AMCG00015098
TU119414 other upstream 13008 2888250 ~ 2891696 (-) False AMCG00015135
TU119447 other upstream 102955 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 310927 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 321179 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 474637 3349879 ~ 3350442 (-) True G95921

Expression Profile