RNA id: AMCG00015144


Basic Information

Item Value
RNA id AMCG00015144
length 1117
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00015144
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3000816 ~ 3008611 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGACAGAGTTGTTGTCTCAGGGGCGCAGGATGTCCATCACTGTTCAACTGGCCCCTGCGAGTGTGTGCTGTGGACCGGGGCAAAGGACTGTGAGTGCAGGGGGAACACAGCGCGTCGTGTGCGTGTCTTCCATACGGACCCATATTGAAGCGACACACACGCAACATGGCAGCGCACCGGGGACGCGGTTGAACACGCTTGATTGTAGTCGTGACCTCTGTCTTTAAACATCCGTAGACGAACAAACTCAAGTCACCCCCCCACAAGCAAAGCAACTCCGAGACGAGACACAATCCCCAAGTCAAACCGTCATTGCATTGTAGCCGCATCTTTCGACCCGGTCTCTCTTTCAGCCGCCGGTGCGATGCGCTTGTCCCTGCCGGCTTTGATCTCTCATGGCCGGGTCGCCCGGCGGATGGGCCTGGGCCCCGAGTCCCGGATCAACATGCTGCGCAATATCCTGACCGGGCTGGTGCGACATGAGCGCATCGAGACCACCTGGGCCCGGGCGGACGAGGTGCGGGTGTACGCCGAGAAGGAGAAGGATCTGGTCCACAAGCTCTTCAAGGTCCTGGTGCCGCGCTTCGAGACCCAGCCGGGCCGCTACACCAACCTCTACCAGATCCCCCCCCGCCAGAACCTCGACCGGGCAAAGATGGCCGTCCTGGAGTACCGGGGCAACCCCTACCCCCCCCTGCGTACCCAACACCGAGACTCGGACCACACCCTCCTCAACACACTGCTCAGAGGCTACAGGGAGGAGAGGCAGAGCCAGGGTGGCAGCTCGGCTAACTGAGCCTGGATGGAAGAGGCCAGGCTAGTAGCCTGAAGGACGATCAGTGCTGGAGGGGCAGAGAAATGTCTCGTGGGACTGTGTGCTGTGTCTCTCCAGCAACAGGGCTGCAGACACTGCTGTGCAGAGACTTCACTTAATCAATGTAGATATCGATGGATGTAATAATGGTTGGGATAAAACTCATAGTAATTCAAATGATGATCctaataaatgttattttaaacccCAAACAGACATATATTCCTttaggagggggagagggagggaaataaGAGGGTTTGAATTTGAGAGGAAAGGGAATGAGAGAGTCTGAACatgag

Function

GO:      GO:0030529

KEGG:

id description
K02879 RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119456 lncRNA downstream 6661 2993674 ~ 2994155 (-) True G95798
TU119442 lncRNA downstream 37471 2960335 ~ 2963345 (-) True G95786
TU119434 lncRNA downstream 54964 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 61721 2936294 ~ 2939095 (-) True G95780
TU119422 lncRNA downstream 125574 2874107 ~ 2875242 (-) False AMCG00015140
TU119476 lncRNA upstream 116820 3125431 ~ 3127592 (-) True G95814
TU119642 lncRNA upstream 463596 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 593993 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 609162 3617773 ~ 3618298 (-) True G95957
TU119680 lncRNA upstream 721388 3729999 ~ 3730319 (-) True G95968
AMCG00015136 mRNA downstream 72539 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015139 mRNA downstream 78304 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 90402 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015137 mRNA downstream 97184 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015135 mRNA downstream 109189 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015154 mRNA upstream 226894 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015153 mRNA upstream 233499 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015152 mRNA upstream 242370 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 295146 3303757 ~ 3313326 (-) True AMCG00015158
AMCG00015157 mRNA upstream 335763 3344374 ~ 3347587 (-) True AMCG00015157
TU119447 other downstream 20408 2978197 ~ 2980408 (-) True G95791
TU119414 other downstream 109120 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 184749 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 330572 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 649766 2350660 ~ 2351050 (-) True G95536
TU119524 other upstream 177558 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 187810 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 341268 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 595992 3604603 ~ 3607192 (-) False AMCG00015164
TU119841 other upstream 1166268 4174879 ~ 4180441 (-) True G96094

Expression Profile