RNA id: AMCG00015148


Basic Information

Item Value
RNA id AMCG00015148
length 2670
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00015148
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3170182 ~ 3173456 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gctgTGGAttcaaacaaattacattatgaATGCACCACGGCTATATGGAAGGATGTGGTCAAATTGGAGAGGGATGCCCCCAGTGTCCGGGTTGTCCTGGGCCAGACGGCCATTTTGTCATGCTGTTACAGCCCCCTAATACCAGAGTGTAACAAAACCTCTACTACCACCCCCACCTCCAACCCTTGCCCTTCAGTCCAATGGACCTGGATACGGAGGGAGACGCACAACTCTTCGTCCTGCGGGAACATGACTAACGACAACCGTTTCACCATGTGGGTGGAGTGGTTGGGGCCCAGACAGATTTGCGGAAAACTCACCATCAGACAGAGCCACTACAATGACAGCCAGCTGTACCGCTGCAAGCTAGAGGACAACAACAGCATCATTTTCAGCCACGGCACCTACCTCAGGGTGtatgtgcCCATTCCCAGGCTGCTGTCCCTCAATGAGGACACTAAGAACAGTCTCTTGAAGGCCCAGGGGATCCTGCTGATGCTCTGTGTGTTACTGCCCGGGGCAGCACTGCTCTGCAAGgGCCTGAATCTGGATGAGTGCTCCATGTACCATGACATCTCGCGCTCAGGGGTCAGGGGGCCGTACGAAGACGTGGGCAACCTGAGAGACTGTGACATCCAGCTGGAGAAaccctgagagggagagggagagggagggaggggagataGGTAAGGGGGGAGAATATTTTAAAACgattctctctcccttttccagTTGCaatgttttccctttaattGACTTAACTGCTTTTCTGGCTGCCTGCCTACATTAATTACTAAGTGTATAGATGAACTTGAATTAATATGAACTAATTAATTTGACCAATTTTCCACAAGACATTCAGCTGACAGTAGGGtgagggagatggagggagggagagggagatggagggagggagagggagaaatagAGAGGTgagggagtgagtgagagaCTCACTAGATGGAGTGGGAGTGTAGTGGCTTCTAAGTCAGATTTACTGGAAAAGTTTCAAAGCACCTTTGTCCTGTCCtgttgttcttctgttctttaTTCAGGATTCCATTCTTTCAGTATATCTGTGTCTTTCGTCCATTTAacatcacttccgtgaccaatcTGATGTGTCTAATAgtagaaaagtaaataaagagaGCAGGAAGAGGAGTAGGAGTAGGAGGTTGAAAACTGTGTAGCTTCCAATACTGCTAGGACTGCCATTATCTACTTCTCCCAATTACTTCTTGATATGGGCTTGGCTTCCAAAAATAGTGGGCATGGGCAAGCTGTGACCCACCTCCAATAGTGAGTGTCCAGATAATAAATCAAAAGATGGGAAGTAAATTAATCTAaactaattaataaatcataattctTCTTAAACATAACCCTAATTACTTTTGGCTCctacagggagggagagagaaaaaaagtacaCACTCCCTTTGacactttaaaattaaacttctcCAGTCAAATCCATCCCTACACCAGcatcaataaagaaaaacaatgaaaaggcAGCATTTTAATCGTTGTGACTGTTCCCAGTGAGCCCTCCCAATCACTAACTTGATTAAACGGCAAATTCACACCACATGCCCATTAGAGAGAGGAGTTGGATCTGTCTTGACAATGTGATCGATGGACTAATaggttttttatatattatttttgttttgtaaatgcagtTATATAGATTGTCTGCACATTTACAATTTGGCGAATATTCAGTGGTTGTTGAACTTGTGGACAGtggggttaaaaataaatgccccTTTACCCATTATCAAAAAGCCTAGGTTTTAGCTAGCTTTACCTTTTCTCATGCTGATCACAGTCAATATAAAAGCAGGATTAACTTTCACgcagatttgatttgatctgatctgtgtctgtcatttatttttgctaattTTCTGTTGCAGAGCAGAGCTTAAAGAGGAGAAAGGGAGAATGGAGGAAACATTAGAAAAGAGAGATGCAGGAGAGATAGGATAGGGGAGGAAAGGGAGAAAACATAAGGAGTCCCATTCAAACTTCCATCACTAATGCCACTAATCTCTTCTCCATCACTgtgccccctccccctttcaGGAATCTGGAGTTACCACTGCAAGAgatgcagggagagagaaaggggagaagGTAGAGAAATAGgcagggaggaagagaggagggaagagacatagggagagaggaagagaaagatgGAGAGCGAGGcatagggggagagagagaggattggGGTCTGTGACAAGCAGCTGATGTATTTCTGAAGGGTTTTCTTTGAtgtgtttggtttgtgtgtgaaataacatgaataaaatcaaaacctAACTAACCACCACTGGCCTCCAAGCAGAGTGCTGTGTGACACCTGGCAGCCCcaacactcactgacacactgacaccgaCACAGCcaatgactgatacactgactgtctgacagacacactgactgactgatacccTGACACTGAGTCACTGACTACACTTAatgtctgactgactgatatactgactgtctgactgactgacacacttacTGATACATAATGCATAATTCCTGTATTTACTGTTACCATTGCCCTATTCTTGAGCACTGGACATGCCTGTCAATGCTAtggcaacactgatgtcaatTAATCCATGCCAATAAAGCCtttataa

Function

GO: NA

KEGG:

id description
K06506 CD79A, IGA; CD79A antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119402 lncRNA upstream 176011 2993674 ~ 2994171 (+) True G95753
TU119389 lncRNA upstream 227281 2942657 ~ 2942901 (+) True G95742
TU119387 lncRNA upstream 231061 2938924 ~ 2939121 (+) True G95740
TU119346 lncRNA upstream 337421 2831750 ~ 2832761 (+) True G95706
TU119343 lncRNA upstream 346422 2820467 ~ 2823760 (+) False G95704
TU119500 lncRNA downstream 68732 3242188 ~ 3244332 (+) True G95828
TU119513 lncRNA downstream 76860 3250316 ~ 3250524 (+) True G95839
TU119555 lncRNA downstream 129219 3302675 ~ 3304322 (+) True G95874
TU119559 lncRNA downstream 138462 3311918 ~ 3325570 (+) True G95878
TU119567 lncRNA downstream 170920 3344376 ~ 3347075 (+) False G95882
AMCG00015145 mRNA upstream 42811 3124724 ~ 3127371 (+) True AMCG00015145
AMCG00015146 mRNA upstream 50206 3105851 ~ 3119976 (+) True AMCG00015146
AMCG00015147 mRNA upstream 80231 3084368 ~ 3089951 (+) True AMCG00015147
AMCG00015143 mRNA upstream 169505 2988655 ~ 3000677 (+) True AMCG00015143
AMCG00015141 mRNA upstream 185256 2976386 ~ 2984926 (+) True AMCG00015141
AMCG00015149 mRNA downstream 463 3173919 ~ 3183191 (+) True AMCG00015149
AMCG00015151 mRNA downstream 11275 3184731 ~ 3186540 (+) True AMCG00015151
AMCG00015150 mRNA downstream 16110 3189566 ~ 3201103 (+) True AMCG00015150
AMCG00015155 mRNA downstream 110826 3284282 ~ 3295715 (+) True AMCG00015155
AMCG00015162 mRNA downstream 380788 3554244 ~ 3555842 (+) True AMCG00015162
TU119395 other upstream 202855 2965301 ~ 2967327 (+) False AMCG00015142
TU119344 other upstream 346422 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 361687 2806811 ~ 2808495 (+) True G95693
TU119243 other upstream 504056 2664504 ~ 2666126 (+) True G95624
TU119235 other upstream 511431 2657485 ~ 2658751 (+) True G95618
TU119665 other downstream 468484 3641940 ~ 3642200 (+) True G95955
TU119711 other downstream 796373 3969829 ~ 3971683 (+) False G95992
TU119757 other downstream 915745 4089201 ~ 4100140 (+) True G96030
TU120035 other downstream 1702665 4876121 ~ 4879896 (+) True G96264
TU120099 other downstream 1847910 5021366 ~ 5022052 (+) True G96317

Expression Profile