RNA id: AMCG00015153


Basic Information

Item Value
RNA id AMCG00015153
length 3757
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00015153
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3242110 ~ 3247588 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCATGGCCACTGCCAGGACGGAGAACCCCGCTTCCGTGGTGATGGGGTTGGGGAAGCCCAACGGGCAGCTCCGAGGACAGCCCAAGCCAGCCGGCACTCACTCAGGACCACCCGGCATGGGCCCTCAACCGGGGAAGGGCCTGGGTGGCCCTCACAGACATGGAGGCGCTCCCAGCCAGAACAGCAGTGGAATCAGgttTGGTGATGACTGGAAgaagtctctccagctccctccCAAAGACACTCGACACAAAACCTCAGATGTGACAGCGACAAAGGGCAATGAGTTTGAAGATTACTGTCTGAAGAGAGAGCTGCTGATGGGCATCTTCGAGATGGGTTGGGAGAAGCCATCACCCATTCAGGAGGAGAGTATCCCCATCGCTCTTTCGGGTCGGGACATCCTGGCTCGTGCCAAGAACGGCACAGGCAAGAGCGGGGCCTACCTCATCCCCCTGCTGGAGAGGATTGACCTCAACAAGGACTTCATACAGGcCATGGTGATGGTGCCCACTCGAGAGCTGGCTCTGCAGGTCAGTCAGATCTGTATCCAGGTCAGTAAGCACCTGGGCGGGGTCAAGGTGATGGCCACCACGGGTGGCACCAACCTGCGCGATGACATCATGAGGCTGGATGAGACGGTCCATGTGGTGATTGCCACTCCGGGTCGTATTCTGGACCTGATCAAGAAGGGTGTGGCCAAGGTGGACCGTGTCCAGATGATGGTGATGGATGAGgctgACAAGCTGCTGTCCCAGGACTTTGTAATTCTGATAGAGGACATCATCAGCTTCCTGCCCAAGAACAGACAGATCCTGCTCTACTCTGCCACCTTCCCCATCAGCGTTCAGAAATTCATGTCAAAGCACCTGCAGAAGCCCTATGAGATTAACCTGATGGATGAGTTGACCCTGAAGGGCATCACACAGTATTACGCCTacgtcactgagagacagaaagTGCACTGTCTCAACACCCTCTTCTCCAGGCTTCAGATCAACCAGTCGATTATATTCTGTAACTCCACTCAGCGCGTGGAGCTGCTGGCCAAGAAGATCACCCAGCTGGGCTACTCCTGCTTCTACATTCACGCCAAGATGATGCAGGAGTACAGGAACCGTGTGTTTCATGACTTCAGAAATGGACTCTGCAGGAACCTGGTCAGCACTGACCTGTTCACCAGGGGTATCGATATCCAGGCTGTGAACGTAGTCATCAACTTCGACTTCCCCAAGAATGCCGAGACCTACCTGCACCGCATCGGCCGCTCCGGTCGTTTTGGTCACCTGGGTCTGGCCATTAACCTCATCACGTCGGACGACCGCTTCAACCTGAAGGCCATCGAGGAGCAGCTGTGCACTGACATCAAGCCCATCCCGGGCGCAATCGACAAGAGCCTGTACGTAGCCGAGTACCACTGCCAGGGCCCCCCCGGCTCACCGCCCACCACGCCGGGCCCCCCTGGAACCACCGGCCTTCCGCCTGCCGctgcacacagagagggagcTGAGCATCAGGAGCTGTAGAGGTCTGCAGCTCCAGTGAGACTCGGCTCTGCCTCAGACCACAgttccccttttttattttgtttcatttatttttctggcttCGTTTTCCCCTCCAttcttttgtgttcattttattttccatttcctccACCCGGACACTTGACTAACAGCTGACCAACCCACCTGTCAGCCCACTTGCTCCAGGACCCGATTGACCCATCCCCGGCCCAGACACCTCAACGACTCGATCCAGTATCTAGTCTATCCAGCTGATGAAACCACTGGTCCTCACCCTCTGTCTATCCAATTAACCAACCCACCCTGCGCCTCAGCACCTTTACCAACCCCTGCACTGCCTTTATGGGCTTCTTAACTAGTTTAACCAGCCTGACCCACTGCGCCGCACCAGCAAAATTAACTGAACCAGCCTAAGCGGTCTCCCAGCCCAGCCCTCCCCACAGGGCCGTAACTGACCCATCTCAACTAGCTAGACCTGGCAGCCAGATGCACCTTCCCGCTTCCCTCCTAAATCCcctctttccttccttccttccttccttccttccttccttccttccttccttccttcctccctccctccctccctcccatcGTTCTCCTCTTTTCCCTCCTAACAATACACAGATATAAGTGCCTTACCCCCCCATACAGGGCTGCTCTAACTGTCTCCTACCCCCTCTGCTCTACTCTGCTTTGTCGTATAGCACGGTAGCACTGGTCTCGAAACAACACAAGGGAGAAGGAGAATTTTAGGtggaaaatataatgaaatacagaacCCTCCCCCAAGCTTTAAAAGCTTTAGAATCCGGTTGATATGTCTTCTCTtagtctgttttttaaatttctaaTCTCCTTACTTGAACCTAACTGACAGAAGGGAGAGAGACGGAGTTGCCATTGGTACAAACCGGGGTAGGGTGGGGGCTGGGATATGAAGTTTGGCCATGACTGGAAAACCTttggggagagggggaagaatATTTGTGTGTTCTTCCCTGAGCTGATTTAATTTCCCCCGTTGGTCAGTTGTTTGATTTACAGTTCACCAGGttcactcgctctctctcctgaaTGACTAAGATCTGTTGTGTTGGTCTGACTGTCACCAACGGGAGTGTTGTCCTCTGATTGGATGGGGAGAAAGGGAGTGAGACCAGTTTAGACCGTAAGAGACGCATTGACAGACAGCCACAGATGTGCAAAGATGATAACGGACACCCAGCAGCAAAACAAACGCCCTTGTGCTTTTTcagattttggttttaattccTGTTGAGTTAGTCTAGAGGGACAGACAGAACGAGAGCCTATGACCAAGTGACAGATGCAGTGTGACAGACAGATGCACTCTTggacgttttttcttttgttttaactcTGTTCTCTATCTCGAGAAAAAACAGGCAGCTAATATTCAACCAGAAATgcccccctcaccccccactTCCTTCCCCTCTCCATCACCACCAAAGACTTGTTTACACAATCCCTTCATCCTCTactgtctctgtttctgttttttgtttaattgagaCAGAGAGGTGAAGGTGCTCGTTCAGATGAGGATAGAAGCATGTccagtatttgattttcattttttatttttggtatttggAATTGTGGGAATTTGAAGTTCCTTTTGTACCTTGTGGTGGGAATCTGGGGGGTGGAGGTCAGAGGTGGGAGTGGGTGGGACCTCTGGCTAATTAGCTATTTTGATAAAGGCCTCAAGGTGTGGTGTCTTCACAGTGGACAGCGATCCTAATTGACACGCCCCCAATTTAGCAACTTGAGTCCAGTTGAGCCGAAATTTCCAATGAGACTGTGTgaaagattgtgtgtgtgtgtgtgtgtgagagtgaatgagtgagtgagtgtgtaagaCTGAGAGAGCAACAGAGAGGGGAGCAGAGGGAGTGAGAGTTAGATTAGTAAAACCAATTAAGAAGGTAGCTCTGTAGAAATCTGGATCTCATTACCACCTTCCTCCTTCTTGCCCTGTCACagccctcctctctcctcccacaGAGACCAATGGCCTCCAGGGACCAGAGCTGGAGTCATACTGCTGTAAATAAATCCCACAACAACACCGTGTAACCTGTataaggggagagagagtgagagtggggGCAGGAGTGGGGTTGAATGTGGTGGAGGGGTGCATTGTGTATATACTGtgtacagaacaaaaaaaaaaaaacatttaatgtagattttcCT

Function

GO: NA

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119476 lncRNA downstream 114518 3125431 ~ 3127592 (-) True G95814
TU119456 lncRNA downstream 247955 2993674 ~ 2994155 (-) True G95798
TU119442 lncRNA downstream 278765 2960335 ~ 2963345 (-) True G95786
TU119434 lncRNA downstream 296258 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 303015 2936294 ~ 2939095 (-) True G95780
TU119642 lncRNA upstream 224619 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 355016 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 370185 3617773 ~ 3618298 (-) True G95957
TU119680 lncRNA upstream 482411 3729999 ~ 3730319 (-) True G95968
TU119690 lncRNA upstream 623488 3871076 ~ 3871334 (-) True G95978
AMCG00015154 mRNA downstream 2585 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015144 mRNA downstream 233499 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015136 mRNA downstream 313833 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015139 mRNA downstream 319598 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 331696 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015152 mRNA upstream 3393 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 56169 3303757 ~ 3313326 (-) True AMCG00015158
AMCG00015157 mRNA upstream 96786 3344374 ~ 3347587 (-) True AMCG00015157
AMCG00015156 mRNA upstream 104030 3351618 ~ 3358905 (-) True AMCG00015156
AMCG00015160 mRNA upstream 147299 3394887 ~ 3398152 (-) True AMCG00015160
TU119528 other downstream 44921 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 53017 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 261702 2978197 ~ 2980408 (-) True G95791
TU119414 other downstream 350414 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 426043 2813647 ~ 2816067 (-) True G95700
TU119619 other upstream 102291 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 357015 3604603 ~ 3607192 (-) False AMCG00015164
TU119841 other upstream 927291 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 1370123 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 1530805 4778393 ~ 4802904 (-) True AMCG00015203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000321_03426560_03434271.mRNA True 2414 mRNA 0.43 12 CI01000321 3426151 ~ 3434782 (-)