RNA id: AMCG00015154


Basic Information

Item Value
RNA id AMCG00015154
length 1147
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00015154
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3235505 ~ 3239525 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGAACCGTCCTCTGACTGGAAAACAGCGTGAGTGGAACACGAGCAGCCACTGTGTCCCAGTCTACCTGCAATCCCTCTGCACATCTCTtccctcccatctctctcttttcatttgccccctccccctcttctctccccccttacctctttctctgtgttagtgtgtcagtgtttgggTGGCTATGGGCAATGTTTTGGCCGCAGgggctccccctccccctccccctccccccgcccCTCCCCTGGGCAGCGTCCCCGCTCCCTCCCCAGGACTCATGTCAGTGCCTCCGGGGTTCAGCATGCCTTCCATGACCCCCTCCTTGGGCACTGCTGGTGCCGGGCAGGAGGGTGGCGAGAGTGAGGGAGCACTGCCCAATCCAGGGTCGTTTGAGGAGTGTCACCGCAAGTGCAAAGAGATTTTCCCAGTGCAGATGGAGGGAGTCAAGTTAGTTGTCAACAAGGGACTGAGCAATCACTTCCAGGCATTCCCAGTGATGGTGGGTGACATGGATAACAGTGGCAGTCTGAACGCTCAGGTGATTCACCAGCTCAGCACCCGGCTTCGCTCCAAACTGGCCTTCCAGACTCAGCAGGCGAAGTTTGTGAACTGGCAAGGCGATTTGGAGTTCCGTGGAGAAGACTTCACTGCTGCCGTCACCATCGGCAACCCTGACGTCCTCACTGGATCAGGTATAGTGGTGGCTCACTATCTACAGAGCATCACCCCCTCTCTCGCCCTGGGGGGGGAGCTGGTGTACCACCGTCGGCCAGGGGAGGAGGGCACAGTGATGTCACTGGCCGGCAAATACACAGGCAGTAATTTTGTGGCGACTATGACACTAGGGGGCGCTGGAGCACACGCATCCTATTACCACAAAGCCAACGACCAGctgcagGTGGGGGTGGAGCTGGAAGCCAGTTCCAGGATGCAGGAGACCAGCGTGTCGTTCGGGTACCAGCTGGACCTGCCCAAGGCCAACCTGCTCTTTAAAGgcTCGGTGGACAGTAACTGGGTCGTTGGGGCCACACTGGAGAAGAAGCTGCCGCCACTGCCCCTGTCTCTGGCCATGGGGGCGTTCCTCAACCACCGCAAGAACAAGTTTCATCTGGGCCACTCTGCACAGGCCGCTCACGCCGAGCAGTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K11518 TOM40; mitochondrial import receptor subunit TOM40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119476 lncRNA downstream 107913 3125431 ~ 3127592 (-) True G95814
TU119456 lncRNA downstream 241350 2993674 ~ 2994155 (-) True G95798
TU119442 lncRNA downstream 272160 2960335 ~ 2963345 (-) True G95786
TU119434 lncRNA downstream 289653 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 296410 2936294 ~ 2939095 (-) True G95780
TU119642 lncRNA upstream 232682 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 363079 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 378248 3617773 ~ 3618298 (-) True G95957
TU119680 lncRNA upstream 490474 3729999 ~ 3730319 (-) True G95968
TU119690 lncRNA upstream 631551 3871076 ~ 3871334 (-) True G95978
AMCG00015144 mRNA downstream 226894 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015136 mRNA downstream 307228 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015139 mRNA downstream 312993 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 325091 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015137 mRNA downstream 331873 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015153 mRNA upstream 2585 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015152 mRNA upstream 11456 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 64232 3303757 ~ 3313326 (-) True AMCG00015158
AMCG00015157 mRNA upstream 104849 3344374 ~ 3347587 (-) True AMCG00015157
AMCG00015156 mRNA upstream 112093 3351618 ~ 3358905 (-) True AMCG00015156
TU119528 other downstream 38316 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 46412 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 255097 2978197 ~ 2980408 (-) True G95791
TU119414 other downstream 343809 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 419438 2813647 ~ 2816067 (-) True G95700
TU119619 other upstream 110354 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 365078 3604603 ~ 3607192 (-) False AMCG00015164
TU119841 other upstream 935354 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 1378186 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 1538868 4778393 ~ 4802904 (-) True AMCG00015203

Expression Profile