RNA id: AMCG00015156


Basic Information

Item Value
RNA id AMCG00015156
length 2768
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00015156
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3351618 ~ 3358905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaactTGTGCGGCCAGGCAGTGCAGGCTGAGAATGTGACTGTGAAGGAGGGTGGCACGGCGGAGATCAACTGCAAACTGCACAACTACGATGGATCCATCGTCGTCATCCAGAACCCCCGCAGACAGACACTGTTCTTCAATGGGACCagagttcccCCAGAGGTGCCCCAGGTGCTGGTGCAGTCGCAGGCAGTGGAGGGGGGGGAGGTGGAGCTCACCTGCCTGTCTCCCCGCAGCAAACCCCCTGCCTCCCTGCACTGGTACAGAGACCGCCGGGAGATCCCAGgagttTCCAGTCAGCAGGACAGTGGTCAGACGGTCAGTGTATCGTCAACAGTCCGTTTCATTGTGTCCCGACGGGACCACAAGGCAGCCCTGACCTGTGAGGCCTCGCATCCAAGCCTGGGTTCACAACGCAGGGTTGCCCACTACATCTCACCCACGGTGCGGATCATTCCCCCACCGGGAGTCCTGCGCGAGGGCGACCCCCTCTCCCTGACTTGCTCAGTCACCGGCAACCCCCTgccgcACAGTGTGGAGTGGTCACGGGTGAACGACTCCCTGCCAGAGAGGGCAGAGACCAAGGGGACAGTGCTCTGGGTGCCACGCCTTAGTGCTGCTCACAATGGCTCCTACCTCTGCCAGGCCAGCAACCAGTATGGTCGCGCGGCAGACATATACACACTGGTGGTGTATGACCCGGGGGCGGTGGTGGAGGCCCACAGTGCAGTGCCCTATGCGGTGGTGGGAGGAGTGCTGGCGCTGCTGGTCTTCTCGGTGGTGTGTGTCCTCATCGTCACCATCTGGTGTTCCGTCCGACAgaaagGCTCCTATCTGACTCATGAGGCCAGCGGGCTGGACGAGCACGGAGAGGTGCAGGAGGCCTTTCTGAACGGGGGCGAAGGTCGCGAGGGCAAGAAGGAGTACCTGCTGTAGCGCCACCAGCTCGCTCCCCTGGCagcccccttcctctctctctctccctcgtcCCCTTGTGGTAGACCTCCAGAACTGCAACCTGCTACTGCGAGCTGAAGCCAAGCCAACAACCAGACCAacacaccgactgactgacCGACCGAAGAGACTGATAACAATCACAGCAACTccaacactgagagagagggagagaaagagacagagagagagagagagggaaggaggtgaagagagagatggggagagggtggagagaggaagagatgtAAGGTTCAACCATATCAGTAATAACTTTCGGGAGCGAGAGTGagttggagagagagatagagaaagggagagagattgaGGTGCTGGaagggagagacagaataaGAGAGATatggagagtgagagagagagagagggagcagaagggggagagagaaggaattCACAACCAAATCAGAAATTATATTTAGATAAGAGGGATGGGAAGAGAGTGGGAGGGGGGATTGATGGggagaaggaaacaaaaaatgtatactcAGGCACTTAAAACTtcactcagagagagagaggcagagagaaggaagggatgaagagagagaggaagggaggggttGGGGTTTAGGTGACAGAGAGATTAAAGCAAATTGGAATTTAATTGATaaagagatagagaaagagtgtcctcccttcctctctctctctctctctctctctctgtcccttgTCCTGTTGTGTCTGTTAATGACTAACAGACTCTgtcacctcctctctctctctccctctctccctctctctctccctatccctCTCAATTTAATCCAATTCAAGTCGATTCAAGAAAGCTATATTGGCAATGAcaaagtctctctctcagtctttcTCTCTCGCACATGGGAAGTACGGGCTACGGGAATGCCAGACTGGAAGAACgacaaaaacaatatacaatttaaaaaaaagatgcgAATGACGTAAACGAACGAATACGCAACTCCTTACAGCTCCTTCCCGCCAGGTCTGTTGAGACATACAAGATGAACgacacaggagagaaagaaaaaaaaaacgagactCAAAGTTTCGCATTAAATGTGTGCAGCCGGCCGCAGAAGACGACAGAAATGTTGAGATTcacagtatatacacatatcTCGAAAATGTAACtctttgtattaaaatgatcTTTTAAACTCCTAACAGCGCTAGGATCATCGTTAGactagaattaaaataaagattaaaaacgCAGATCTGTGTATGTGCGCATAAACACCATTTCATTCTGActgtaaccttttttttattattattattattattattatcattattttcaaaagattaCAGTTCTTGTTAatattcttgttgttgttgttattattattattattattattgttattatcattattgttattattcttgttaCTGTTATGATTActatcattgttattgttaatactTGTTCGGTTTTTCATgtctcatttttttattattctgtaaaaAGTTTCtttgagtgtctgtctgtccctgtgtgtgtgtgtctgacagtgtgtgtgtcaccccctctgtgtgtgtctatgcgtgtgtatgtgtgtgtatgactctctctctctgtgtttgtgtctgtccctctctctgtctctatgtgtgtctgtatgtctgtgtgtgggtgaggGGGGTCTGTCtatctctgtatgtgtgtctctatctctctctctccttctgatTGTGTCTGTAGGTCTCCcctcctgtgtctgtgtgagcgcgtgtgtctctgtccccGTGTGTCTCcatgtctctctgtgttcatgttgttgttttagctAACTCTTCTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06783 CADM4, IGSF4C, TSLL2; cell adhesion molecule 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119476 lncRNA downstream 224026 3125431 ~ 3127592 (-) True G95814
TU119456 lncRNA downstream 357463 2993674 ~ 2994155 (-) True G95798
TU119442 lncRNA downstream 388273 2960335 ~ 2963345 (-) True G95786
TU119434 lncRNA downstream 405766 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 412523 2936294 ~ 2939095 (-) True G95780
TU119642 lncRNA upstream 113302 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 243699 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 258868 3617773 ~ 3618298 (-) True G95957
TU119680 lncRNA upstream 371094 3729999 ~ 3730319 (-) True G95968
TU119690 lncRNA upstream 512171 3871076 ~ 3871334 (-) True G95978
AMCG00015157 mRNA downstream 4031 3344374 ~ 3347587 (-) True AMCG00015157
AMCG00015158 mRNA downstream 38292 3303757 ~ 3313326 (-) True AMCG00015158
AMCG00015152 mRNA downstream 82857 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015153 mRNA downstream 104030 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015154 mRNA downstream 112093 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015160 mRNA upstream 35982 3394887 ~ 3398152 (-) True AMCG00015160
AMCG00015159 mRNA upstream 44569 3403474 ~ 3407541 (-) True AMCG00015159
AMCG00015161 mRNA upstream 49684 3408589 ~ 3414202 (-) True AMCG00015161
AMCG00015163 mRNA upstream 57947 3416852 ~ 3464811 (-) True AMCG00015163
AMCG00015164 mRNA upstream 244778 3603683 ~ 3607097 (-) True AMCG00015164
TU119619 other downstream 1176 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 154429 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 162525 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 371210 2978197 ~ 2980408 (-) True G95791
TU119414 other downstream 459922 2888250 ~ 2891696 (-) False AMCG00015135
TU119671 other upstream 245698 3604603 ~ 3607192 (-) False AMCG00015164
TU119841 other upstream 815974 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 1258806 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 1419488 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 1609145 4968050 ~ 4976350 (-) True AMCG00015210

Expression Profile