RNA id: AMCG00015160


Basic Information

Item Value
RNA id AMCG00015160
length 561
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00015160
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3394887 ~ 3398152 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCCAGCTGCTCCAGTCCTGGAGGGTCACTCGGTCACTCTGCAGTGCCTCTCAGACCTGGAAGATGACATGAGCTCAGTCCATTTTGAGAAATACTCCCAGGTGAACGCCACGCGTGAGCTGGGCCGGCTGGTCCTGACGGTGTCGCAGGTCCAGAGTTGGCACAGCGGGCCCTACCGCTGCCACTCAGACAACACCCCCAACTACACTGACATCTCCAACTCCATCAGCGTGCCAGTGCATTACATGCGTGACGTGTCTATCTATAAGGACAGCAACTTCTACAGCCGCTACTCTGGCCAGCTGCAGGACCTGTGTGTGCCTGAAGGGGGCGATGTGGAGGGCAATGACTGGGTGGAGCAGTCCAGCAAGCTGAAGCTGCGGCGGGTGCGAGTGGAGGATTCTGGGAAATACACCTGCACCGCCTCCCACCCCTCCGTGTCCCAGCTGAGGAAGAGCAAGACCCTGACTCTGATTGTCACCCCCGAGGAGCTTCCTTGGCTGCAGTCTTCCCAGGGCCGTCTTGTGCTGATTACATCAGTGCCAGGGgcgACCATTTAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119476 lncRNA downstream 267295 3125431 ~ 3127592 (-) True G95814
TU119456 lncRNA downstream 400732 2993674 ~ 2994155 (-) True G95798
TU119442 lncRNA downstream 431542 2960335 ~ 2963345 (-) True G95786
TU119434 lncRNA downstream 449035 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 455792 2936294 ~ 2939095 (-) True G95780
TU119642 lncRNA upstream 74055 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 204452 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 219621 3617773 ~ 3618298 (-) True G95957
TU119680 lncRNA upstream 331847 3729999 ~ 3730319 (-) True G95968
TU119690 lncRNA upstream 472924 3871076 ~ 3871334 (-) True G95978
AMCG00015156 mRNA downstream 35982 3351618 ~ 3358905 (-) True AMCG00015156
AMCG00015157 mRNA downstream 47300 3344374 ~ 3347587 (-) True AMCG00015157
AMCG00015158 mRNA downstream 81561 3303757 ~ 3313326 (-) True AMCG00015158
AMCG00015152 mRNA downstream 126126 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015153 mRNA downstream 147299 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015159 mRNA upstream 5322 3403474 ~ 3407541 (-) True AMCG00015159
AMCG00015161 mRNA upstream 10437 3408589 ~ 3414202 (-) True AMCG00015161
AMCG00015163 mRNA upstream 18700 3416852 ~ 3464811 (-) True AMCG00015163
AMCG00015164 mRNA upstream 205531 3603683 ~ 3607097 (-) True AMCG00015164
AMCG00015169 mRNA upstream 417794 3815946 ~ 3825037 (-) True AMCG00015169
TU119619 other downstream 44445 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 197698 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 205794 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 414479 2978197 ~ 2980408 (-) True G95791
TU119414 other downstream 503191 2888250 ~ 2891696 (-) False AMCG00015135
TU119671 other upstream 206451 3604603 ~ 3607192 (-) False AMCG00015164
TU119841 other upstream 776727 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 1219559 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 1380241 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 1569898 4968050 ~ 4976350 (-) True AMCG00015210

Expression Profile