RNA id: AMCG00015161


Basic Information

Item Value
RNA id AMCG00015161
length 3216
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00015161
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3408589 ~ 3414202 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACTGTACGGCGGAAGTGGATTGGGGACGGTTCTGGGGGTGACACCGGTACAGAGTGGGAAAGAGGAAGATGTGTCTGTGGCGTGCAAGCGGtgcacagaaagaaaacaacactatCGCAAACGCACACAATGATACAGCGGACAATGGCACTCGTTTGTGTCTCCACGTACCCAAGGTAGCGACTCCTGTTTTTCAAAACTGATCGACCATTCGGTTATTGTGGCGGGACGAAGTGTAATGTATCGGTACACAGAGAGAGGGTCTACGGATATCGACGTATTTATGTATCAAAGAATCGTCACGTTAATACAAAAGTGCTGATGTCTGAGTTCACCATCGATATCCAGCTTACTGAGCTGGGGTTCCCAGAGCTCTTGCAGAGCACCACTGAGGGGTCGAAGGTCGAAGGACAACCACCCACACAGGAAGCCCCCGTGGACAGTGCCAATGGAAGCGACGGCCCAGGGGTGTCGATGACCACAGCGGCAGCTCGGCCCATTCCAGAGGGTGTGCAGGGGGGCAGGGGAATGGCAAGAGAAGCAGGGGGGAAGAACAGAGGAAGTGGAATAGGAGGGGCAGGTGGCACAGGGCCAGAAGATGGAGGAGAAAAAGGAGTAGGCAGTGGAGGACAGGGAGGAGGaccaggaagagagggagatggagggggTGGAGGAGAGGCAAAGCGGTTTATCAGAGTGCGCCGGGCGGGGGTGCTGGACCCCCCCAGGAAACGGTGGGCGTCGTCCCCTGAGCCCACGGATGACAGTCAGGAGACGGGgagcgaggaggaggaagaggaggatgaaacAGAGGAGGACCAAAGTAGAGctgccccctccccctccttcatGTGTGAGGTGTGTGGtcgctccctctcctcctccttcgcACTGCAGGAACACCAGCGGCTACACACGGGCGAGCGGCCCTACCGCTGCCAGGAGTGCAGCAAGATGTTCTGCCACCTGGCCAACTACCGCGCCCACCTGCAGCGCCACCGCGTCCCCCCTGGACGCCGGCACCGCTGCAAGGTGTGTGGCGCCATGTTTGAGGCGGAGTCGGAACTCCAGGAGCACCTGGACCGCCACCCCGAGCGTGAGTTCTACCAGTGCGACCACTGCAAGAAGGTCTTCACCTCGCTGCCTGCATGCCAGACCCATCTGGAGGGCCACCGACGGGCCTGGCGTCACACCTGCCCTGACTGTGGGCGGGGCTTCCGGCGGCGCTCCTCCCTGCGCTCCCACCAAGTCTCCCAGCACTCCCACATCGCCGACAATGCTTGCCACACCATCCCCAGCCATGTGACGGCAGCACCGGCCAGGGAtggagctgctgctgacgcCGTTACCAGTACTGCTGCTATGGCACCCCCGTCCACGTCCGCCCCTGCCCCCGCCCCTGCTGATCCTGCCCCTTCCTTCCCCTGCCCAGACTGCTCCCGCGTGTACTCTAAAGAGCGTCTCCTCTTCCGCCACagTTTCTCTCACCGGGGGGTGGAGCCCTACACCTGTGTGCGCTGTGGCTGCCACTTCCGCCTGCCCTCACTGTACCGCCGGCACTCCTGCCGCCCACAGAGCCTGCAGTGCGTGGCGTGCCTGGGTGTCTTCCCTTCCCAGCACGACTTCCAGGCCCACAAGGAGGAGACTGGCTGCTGGGGATACCGGGGCGCAGGAGGCGGGGGGCAGGAGGGTGTTGGAAGAAGGtcaggaggaagagggagaggaggagggccAGGTGGAGGGGAGATCAGGTGCATGGAGTGTGGCCTGGCTTTCACGAGCCGCCAGGAGCTGCAGACACACGCAGGGGCCCACCAGCGTGTCAACGTGTGCTCTGAGTGTGGACGGGGCTTCCGCTCGGCGCTGCTCCTGGTGTCCCACATGCGGGCGCATGGCGGCGACCGGCCCTGCCTCTGCCAGCAGTGTGGCCGTGGCTTCACCCACGCCCAGGACCTCGCCCACCACCGTGACACCTGCCATCTGAGAGAGCCGCcaCAAGAGGTACCCCGCAAGCCGAAGAAAGCCCCCAAGCCCCCCCCGGGCCCCCCCACCTTGCTCCCGCGCCCTATGGCATTCGTGGGTGGGCCACTGCTGATGCCGGCCACGGGGATGGGTGGGGCCTATGTTGTGATTGGTCAGATCCAGtccagtcccagtcccagtcccagtgAGGTGGTGCTACAGTATATGTCACAGGGTGGGCAGGCGGGAGTGGGGGGCAGTTTGCCAAAGCTGGGGGGTGCGGAGAGGGGTGCAGTCAACAGGGCAGGAGGGGTAGGAACTGTGGAGGTGGCGGTACAGCAGTCAGACACTGCTAAGGATGCTAGGAATGTACTGGGCAATGTCAGTGACGATGGCAGTGACACTACCGGCACTATGatgaagggagagggaggaggactagctggaggaggaggcgtGGAAGGAGATCTAGCTGTAGTTGGGAGGGTGGAGGGGATGCTGGTGGAAACAGAGCATACTGGGAAAATAGCTGGCGGAAGTGCAATATTGTCTGCAAGAGTgatggagggaggaggagaagaaggagggaTGGGGACAGAAGTGGAGATAGTGCAAGACGGGGAGGTGGAGGGGATGCCAAGCAGACCTGGGGATTCTGGGAATATAGTGGGCGGAACGCTGGGCCCACAAGCAGAAGTTACACTGAAGGCAGAACCTCGGTCCAAGACGCATGCAGTGGTTAAAGTGGAGCCGATCCCAGTGGACCTCAGTCATGCGCAGAACGGGCTCAGCATCAAAATGGAACTGCTTGATTCGGACAGAGGTGGTTGGGGAGGCTGGGAGGGAGGGACTGAGACACCGGgcagaacagaagaaaagttGAAGActgaaagaggaggaggaggagtaggagaaagagaaggaggaggaggagaggggagttTCAGCTGTGCCTGGGGGGCCAGGGTGAAGTCAGAATGGGGGACTGAGAGGGGAGGTGGCTTCGATAGTGTGGAGGTGGAGCTCTCGGatgagggagagatggaggaggaggaggaggagaaggaggggcAGCCCCACGAATGTGTTACCTGCGGGCGGATTGTTCTGGACGGTGACCTGTTGACACACTACATGACACACGCCCTGGAGTCTGACAGCACCCTCGCCCCCCCGCCCTCCCCTCCCTCTGGCCCCACCCCCAGGTCGCCCCCTCCCCGCAGAATGACTCTGAGACAGCGAAAGACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119476 lncRNA downstream 280997 3125431 ~ 3127592 (-) True G95814
TU119456 lncRNA downstream 414434 2993674 ~ 2994155 (-) True G95798
TU119442 lncRNA downstream 445244 2960335 ~ 2963345 (-) True G95786
TU119434 lncRNA downstream 462737 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 469494 2936294 ~ 2939095 (-) True G95780
TU119642 lncRNA upstream 58005 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 188402 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 203571 3617773 ~ 3618298 (-) True G95957
TU119680 lncRNA upstream 315797 3729999 ~ 3730319 (-) True G95968
TU119690 lncRNA upstream 456874 3871076 ~ 3871334 (-) True G95978
AMCG00015159 mRNA downstream 1048 3403474 ~ 3407541 (-) True AMCG00015159
AMCG00015160 mRNA downstream 10437 3394887 ~ 3398152 (-) True AMCG00015160
AMCG00015156 mRNA downstream 49684 3351618 ~ 3358905 (-) True AMCG00015156
AMCG00015157 mRNA downstream 61002 3344374 ~ 3347587 (-) True AMCG00015157
AMCG00015158 mRNA downstream 95263 3303757 ~ 3313326 (-) True AMCG00015158
AMCG00015163 mRNA upstream 2650 3416852 ~ 3464811 (-) True AMCG00015163
AMCG00015164 mRNA upstream 189481 3603683 ~ 3607097 (-) True AMCG00015164
AMCG00015169 mRNA upstream 401744 3815946 ~ 3825037 (-) True AMCG00015169
AMCG00015175 mRNA upstream 488626 3902828 ~ 3904532 (-) True AMCG00015175
AMCG00015174 mRNA upstream 535942 3950144 ~ 3968980 (-) True AMCG00015174
TU119619 other downstream 58147 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 211400 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 219496 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 428181 2978197 ~ 2980408 (-) True G95791
TU119414 other downstream 516893 2888250 ~ 2891696 (-) False AMCG00015135
TU119671 other upstream 190401 3604603 ~ 3607192 (-) False AMCG00015164
TU119841 other upstream 760677 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 1203509 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 1364191 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 1553848 4968050 ~ 4976350 (-) True AMCG00015210

Expression Profile