RNA id: AMCG00015162


Basic Information

Item Value
RNA id AMCG00015162
length 1017
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00015162
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3554244 ~ 3555842 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGAGCACATGACATTTGATGGGGCCGACTTTATTGACTACttcagcaacaacagcaactacAGCGATGCATTCTACAACTATAGCTACAGTGACAACTGCTGTGCAGGCGGGGATGTGTGTACCCATGAAGAAAGCCTGAAATTCGATGCCCTCTTTCTGCCACCCCTGTACGCTGTGGTGCTGGTGCTGGGGCTGCTGGGTAATGGGCTGGTGCTGGCCGTGCTGTGCCGCTGTCGCCAGAGTCGGAGCGTGACGGATATGTTTGTGCTGAACCTGGCACTGGCTGACACCCTGCTGGTCATCACGCTGCCCCTGTGGGCCGTCCAGGCTGTGCAGGGCTGGATCTTTGGCACCCCCATGTGCAAGATAGTAGGGGTGCTGTTCAAGGCGGTGTCTGACAAGCGGTTGGGGGGGCGGATGGATTGCACCAACAACTACATAAAGGTGGTGGGAAAAGAGAACATGGCGAGCTGGCGGCTGGCCTCCAGGCTGTTGTACCACCTGGCTGGCTTCTTGCTGCCCTCTGCCATTATGGCCTACTGTTACGCCCGCATCCTAGTCACTCTGAGCCGCACACAGGGCACCCAGAGGCACAGGGCCGTGCGTGTCATCATGGCCATCGTTGtgaccttcttcttctgctggaCGCCCTACAACCTGACCTTGCTGGTGGATACCCTGCAGACCCGGGGCAACCTGACCGACAGCTGCGGGGGGCGCACAGCACTGGACGTGTCCCTGGTGGCCACCACCTCTCTGGGGTACCTCCACTGTTGCCTCAACCCACTGCTCTATGCCTTCGTAGGGGTCAAGTTCCGACGCAACCTACTGGAGCTGCTGAGCACATTGGGCTGTCACGTGAAGGGCCAGATTGGGGGGCCAGGGGGCCAGGCGAGGCGGGGGACGCCGAGGGCCCGGGGGGGGTCGCTGTGGTCCGAGTCCAGTGCCAACACCTCCTACACCTCCGCTGTGTTTGGGGATGAGGGCCGGGGACGGGGCCTGGAGAGTATGTAG

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119653 lncRNA upstream 15908 3538132 ~ 3538336 (+) True G95944
TU119641 lncRNA upstream 81524 3472295 ~ 3472720 (+) True G95932
TU119583 lncRNA upstream 87703 3399070 ~ 3466541 (+) False G95892
TU119581 lncRNA upstream 116921 3399070 ~ 3437323 (+) True G95892
TU119596 lncRNA upstream 131291 3415736 ~ 3422953 (+) True G95903
TU119660 lncRNA downstream 45287 3601129 ~ 3601385 (+) True G95950
TU119676 lncRNA downstream 115547 3671389 ~ 3671670 (+) True G95964
TU119684 lncRNA downstream 254723 3810565 ~ 3811060 (+) True G95972
TU119689 lncRNA downstream 315236 3871078 ~ 3871334 (+) True G95977
TU119696 lncRNA downstream 347857 3903699 ~ 3916734 (+) True AMCG00015170
AMCG00015155 mRNA upstream 258529 3284282 ~ 3295715 (+) True AMCG00015155
AMCG00015150 mRNA upstream 353141 3189566 ~ 3201103 (+) True AMCG00015150
AMCG00015151 mRNA upstream 367704 3184731 ~ 3186540 (+) True AMCG00015151
AMCG00015149 mRNA upstream 371053 3173919 ~ 3183191 (+) True AMCG00015149
AMCG00015148 mRNA upstream 380788 3170182 ~ 3173456 (+) True AMCG00015148
AMCG00015166 mRNA downstream 83520 3639362 ~ 3663412 (+) True AMCG00015166
AMCG00015165 mRNA downstream 171071 3726913 ~ 3731964 (+) True AMCG00015165
AMCG00015167 mRNA downstream 198222 3754064 ~ 3756872 (+) True AMCG00015167
AMCG00015168 mRNA downstream 238624 3794466 ~ 3822463 (+) True AMCG00015168
AMCG00015171 mRNA downstream 328628 3884470 ~ 3888917 (+) True AMCG00015171
TU119395 other upstream 586917 2965301 ~ 2967327 (+) False AMCG00015142
TU119344 other upstream 730484 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 745749 2806811 ~ 2808495 (+) True G95693
TU119243 other upstream 888118 2664504 ~ 2666126 (+) True G95624
TU119235 other upstream 895493 2657485 ~ 2658751 (+) True G95618
TU119665 other downstream 86098 3641940 ~ 3642200 (+) True G95955
TU119711 other downstream 413987 3969829 ~ 3971683 (+) False G95992
TU119757 other downstream 533359 4089201 ~ 4100140 (+) True G96030
TU120035 other downstream 1320279 4876121 ~ 4879896 (+) True G96264
TU120099 other downstream 1465524 5021366 ~ 5022052 (+) True G96317

Expression Profile