RNA id: AMCG00015164


Basic Information

Item Value
RNA id AMCG00015164
length 1263
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00015164
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3603683 ~ 3607192 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGTCACAGAGGATTACAACTATGAGGACAACTACGAATATGAAGAGGGGGACGACAACTTGACAGTCTTGTCCACCGCCGCGGCGCCCTGCACCCAGGAGGATGTGTGGCGGTTTGCGCAGCTGTACGCACCCGTGGTGTACCCGCTGGTCTGTGCTCTGGCAATTCTAGGTAACGGGCTGGTGCTAGGTGTGGTGTGGCGGTACCGGCTATCCCGGCGTGGCCGCTCCCCCTACGCTGGCCCTTGTGCCTTCTCCCTGACTGACACCTTCCTGCTGCACCTGTCCCTGTCTGACCTGCTGCTGGCCCTCACCCTGCCCTTCTATGCTGcgcagtgggggggtgggggaggctGGGTATTCGGGGGCACGACCTGCAAGTTGGCGGGGGCAGCCTTCTCGCTCAACCTCTACAGCGGCGTCCTGTTCCTTGCCTGCATCAGCTTTGACCGCTACCTGGCCATTGTGCATGCTCTGGGGGGGagtggtggtggaggaggcagGGGGCAGGGGCGGTGGCTGGGGCTGGGGGGAGTGCAGGGCTCGACACGCGCCCAGCTGACCTGCGCGGTCATCTGGGGCGGCTGTCTGTGCCTCTCTCTCGTGGATGTCTATTTCCGTCAGGTGACACCATTTCCCATGGTGGGGGGCACGGTGGGGTTGGAAGGGCGGCTGCTGTGCCACCGCAAATTCCACTGGGAGAACTCGGACCATTGGCGAGTTGGCCTGCAGttgctggggctggggctgggctTCCTGGTACCCCTGCTGGTCATGCTGTACTGCTACACGTGCATTTTCCGGTCCCTGTGCCTGGCCCCCCGCCCGCCCACGCAACGCCAGCGCTCCCTGCGACTCATCATCTCCATTGTGGGGGTCTTCCTGGTCTGCTGGGGACCCTACAATGGATTTCTCCTGACGGACAGCCTACAGCGGCTGGGGGTGGTGGGCAGGAGCTGCGCGCTGGACAAGGCACTGGACCTGGGCACCCTGGTGTCCGAGAGCCTGGCCCTCGCCCACTGTGCCCTCAACCCGTTGCTCTACGCCTTTGTGGGGGTCAAGTTCAGGCGCGAACTGGGCCACCTGGGAAAGGAGGCACTGGGGTGGTGCCGAGGGAAGAGCCGTAGAGGGGGCTGGGGCCGGAGAGGGTGGGGGAGTGACGGTGGAGGGAGGGGTCAGCGATCCACCAGAGTCTCGGAGCGCTCGCTGACGGCATCGGAGAGCGAGTCCTCAGCAATGTACTATTCTGTCAtggtgtga

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119672 lncRNA downstream 6 3602604 ~ 3603677 (-) True G95960
TU119642 lncRNA downstream 130757 3472207 ~ 3472926 (-) True G95933
TU119476 lncRNA downstream 476091 3125431 ~ 3127592 (-) True G95814
TU119456 lncRNA downstream 609528 2993674 ~ 2994155 (-) True G95798
TU119442 lncRNA downstream 640338 2960335 ~ 2963345 (-) True G95786
TU119668 lncRNA upstream 10676 3617773 ~ 3618298 (-) True G95957
TU119680 lncRNA upstream 122902 3729999 ~ 3730319 (-) True G95968
TU119690 lncRNA upstream 263979 3871076 ~ 3871334 (-) True G95978
TU119734 lncRNA upstream 294715 3901812 ~ 4037171 (-) True G96009
TU119736 lncRNA upstream 296600 3903697 ~ 4039218 (-) False G96010
AMCG00015163 mRNA downstream 138872 3416852 ~ 3464811 (-) True AMCG00015163
AMCG00015161 mRNA downstream 189481 3408589 ~ 3414202 (-) True AMCG00015161
AMCG00015159 mRNA downstream 196142 3403474 ~ 3407541 (-) True AMCG00015159
AMCG00015160 mRNA downstream 205531 3394887 ~ 3398152 (-) True AMCG00015160
AMCG00015156 mRNA downstream 244778 3351618 ~ 3358905 (-) True AMCG00015156
AMCG00015169 mRNA upstream 208849 3815946 ~ 3825037 (-) True AMCG00015169
AMCG00015175 mRNA upstream 295731 3902828 ~ 3904532 (-) True AMCG00015175
AMCG00015174 mRNA upstream 343047 3950144 ~ 3968980 (-) True AMCG00015174
AMCG00015182 mRNA upstream 418557 4025654 ~ 4027415 (-) True AMCG00015182
AMCG00015178 mRNA upstream 430321 4037418 ~ 4039216 (-) True AMCG00015178
TU119619 other downstream 253241 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 406494 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 414590 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 623275 2978197 ~ 2980408 (-) True G95791
TU119414 other downstream 711987 2888250 ~ 2891696 (-) False AMCG00015135
TU119841 other upstream 567782 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 1010614 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 1171296 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 1360953 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 1378475 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile