RNA id: AMCG00015166



Basic Information


Item Value
RNA id AMCG00015166
length 1014
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00015166
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3639362 ~ 3663412 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TATTGTGGCCGCCGTGATGACTGCTGTGGTGCCCGGGAGAAGCTGCGTGCAGCTGTGGCTGGAGATTTTCACAGCTCCTTTGCTGCCCTGGGGTCCAAGCTGTATGCTGTTCAATCCAAGGTGACTTCCCAAGCCATGAAGTGCAGGGAGGTAGCAGGGCAACTGCGGCAAATCGATGCCAGCATGGGGCAGGTGTTCGGCACCAATGAAGACAACTTGATTTTCACATTGTACGGGGATCGCTGGAACCACCTGCCTGGGTCACTGAAACACATCACGGTCGGGCCCTCAGGCATCTGGGGCATCAATAGCACCAACGCCGTCTTGAAACTCGTGGGCGCCAACTGGGTACAGGCCACAGTGGGTTACAAGGGCCCTGGCTCTCCTGCCCCCTGGGAGGGCAGGGCAGGATCTCTCAAGTACCAAAGCTGTGGGCCCCTGGGCTGCTGGGGGGTGAACTACAATGGCAATGTCTATGTGTGTCCAGTGGTATCTCCACAGCAGTGCCAGGGGACAGGGTGGATGCAGGTGTATGGCACACTGTCCATGCTGGAGGTGGGCAGCGATGGCAGTGTGTATGGGGTCATCACTGCTGGTACTGTCTATACCAGGGATGGGATCACCAGCAGTAACCCTGCAGGCACTGGCTGGACAGAGATGAGCGAGTGTGGGAAGTGCAAGCATGTGTCCTTTGACCTGGGTCATCTGTGGTTCGTTGCTGGGGTCAACACTGCGGACAGCATCTACTGCCTGGAACAGGAGGCCACAGTGCGGTACAAGGGCCCCAGCTTCTTCACTATCTGGCAGGACATTACAGGGGGTCTCAAGTACTGCATCTGTGGGCCCGTGGGCTGCTGGGGGGTAAACAATATTAACAAGGTCCATGTTTTGTTGGGGGTGACTCCACAGGGAAAAGGTGTTTGGCCAGAGGTGATTAGCTCACTGTCCATGCTGGAAGTGGGTAGTGATGGCAGTGTTTATGGAGTCAATCGCATTGGGTATATCTATCACAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU119660 lncRNA upstream 37977 3601129 ~ 3601385 (+) True G95950
TU119653 lncRNA upstream 101026 3538132 ~ 3538336 (+) True G95944
TU119641 lncRNA upstream 166642 3472295 ~ 3472720 (+) True G95932
TU119583 lncRNA upstream 172821 3399070 ~ 3466541 (+) False G95892
TU119676 lncRNA downstream 7977 3671389 ~ 3671670 (+) True G95964
TU119684 lncRNA downstream 147153 3810565 ~ 3811060 (+) True G95972
TU119689 lncRNA downstream 207666 3871078 ~ 3871334 (+) True G95977
TU119696 lncRNA downstream 240287 3903699 ~ 3916734 (+) True AMCG00015170
TU119699 lncRNA downstream 270504 3933916 ~ 3935035 (+) True AMCG00015173
AMCG00015162 mRNA upstream 83520 3554244 ~ 3555842 (+) True AMCG00015162
AMCG00015155 mRNA upstream 343647 3284282 ~ 3295715 (+) True AMCG00015155
AMCG00015150 mRNA upstream 438259 3189566 ~ 3201103 (+) True AMCG00015150
AMCG00015151 mRNA upstream 452822 3184731 ~ 3186540 (+) True AMCG00015151
AMCG00015149 mRNA upstream 456171 3173919 ~ 3183191 (+) True AMCG00015149
AMCG00015165 mRNA downstream 63501 3726913 ~ 3731964 (+) True AMCG00015165
AMCG00015167 mRNA downstream 90652 3754064 ~ 3756872 (+) True AMCG00015167
AMCG00015168 mRNA downstream 131054 3794466 ~ 3822463 (+) True AMCG00015168
AMCG00015171 mRNA downstream 221058 3884470 ~ 3888917 (+) True AMCG00015171
AMCG00015172 mRNA downstream 231379 3894791 ~ 3902338 (+) True AMCG00015172
TU119395 other upstream 672035 2965301 ~ 2967327 (+) False AMCG00015142
TU119344 other upstream 815602 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 830867 2806811 ~ 2808495 (+) True G95693
TU119243 other upstream 973236 2664504 ~ 2666126 (+) True G95624
TU119235 other upstream 980611 2657485 ~ 2658751 (+) True G95618
TU119711 other downstream 306417 3969829 ~ 3971683 (+) False G95992
TU119757 other downstream 425789 4089201 ~ 4100140 (+) True G96030
TU120035 other downstream 1212709 4876121 ~ 4879896 (+) True G96264
TU120099 other downstream 1357954 5021366 ~ 5022052 (+) True G96317
TU120210 other downstream 1725525 5388937 ~ 5391723 (+) True G96415

Expression Profile