RNA id: AMCG00015175


Basic Information

Item Value
RNA id AMCG00015175
length 571
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00015175
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3902828 ~ 3904532 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCAGTGCAGGGAGGTTGCAGGGCAACTGCGACAGATTGATGTCAGCGCAGGGCAGGTTTTCGGCACCAATACAGCTGACGCCATCTTCACCCTGTATGGGGGCACCTGGACTCAGCTGCCCGGGGCACTCAAGCATGAAGCCACAGTGGGGTACAAGGGCCCTGGTTCCCCCTTCCACTGGCAGGGCCTCCCGGGGGCTCTCAAGTACTACAGCTGTGGGCCCCTGGGCTGCTGGGGGGTGAACGCCACCGAAGACATCTTCGTGAGGAAGGGGGTGTCTCCACAGCAGTGCCAGGGAACATGGGATTGGCAGCAGGTGGACGGGAAACTGTCCATGATAGAGGAATGGGATCACTAGTAATAACCCTGTGGGCACTGGCTGGACCCCACTAATCATGTGTGCGAAAAGCAAGCATGTGTCCTTTGACCTGGGTCATCTGTGGGTCATCACCCAAGATAACCGGATCTTGGACTGCAGCTGAGCGCTCACAGCCACAGACCCCAcagctttctttgttttggcaataaatattaatatatatatatatatatatatatatatatacata

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119690 lncRNA downstream 31494 3871076 ~ 3871334 (-) True G95978
TU119680 lncRNA downstream 172509 3729999 ~ 3730319 (-) True G95968
TU119668 lncRNA downstream 284530 3617773 ~ 3618298 (-) True G95957
TU119672 lncRNA downstream 299151 3602604 ~ 3603677 (-) True G95960
TU119642 lncRNA downstream 429902 3472207 ~ 3472926 (-) True G95933
TU119735 lncRNA upstream 62497 3967029 ~ 4039218 (-) True G96010
TU119745 lncRNA upstream 65286 3969818 ~ 3970756 (-) True G96018
TU119835 lncRNA upstream 207724 4112256 ~ 4123963 (-) True AMCG00015180
TU119860 lncRNA upstream 311195 4215727 ~ 4216894 (-) True G96110
TU119865 lncRNA upstream 347350 4251882 ~ 4255484 (-) True G96115
AMCG00015169 mRNA downstream 77791 3815946 ~ 3825037 (-) True AMCG00015169
AMCG00015164 mRNA downstream 295731 3603683 ~ 3607097 (-) True AMCG00015164
AMCG00015163 mRNA downstream 438017 3416852 ~ 3464811 (-) True AMCG00015163
AMCG00015161 mRNA downstream 488626 3408589 ~ 3414202 (-) True AMCG00015161
AMCG00015159 mRNA downstream 495287 3403474 ~ 3407541 (-) True AMCG00015159
AMCG00015174 mRNA upstream 45612 3950144 ~ 3968980 (-) True AMCG00015174
AMCG00015182 mRNA upstream 121122 4025654 ~ 4027415 (-) True AMCG00015182
AMCG00015178 mRNA upstream 132886 4037418 ~ 4039216 (-) True AMCG00015178
AMCG00015180 mRNA upstream 205787 4110319 ~ 4112706 (-) False AMCG00015180
AMCG00015181 mRNA upstream 226870 4131402 ~ 4163989 (-) True AMCG00015181
TU119671 other downstream 295636 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 552386 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 705639 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 713735 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 922420 2978197 ~ 2980408 (-) True G95791
TU119841 other upstream 270347 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 713179 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 873861 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 1063518 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 1081040 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile