RNA id: AMCG00015176


Basic Information

Item Value
RNA id AMCG00015176
length 3609
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00015176
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4070082 ~ 4112144 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTGCTACGCTTCCAACAAATGAGCTACAAATCTCCCCCCTCTCTGTTTGCACACCGGGACACCCTGCGCCGACCAAGATATCTCCACCGGGGATCTCGTCGCAACTTCACTTACAGTATAATGGAATCCATTGGCAGTAACACTCTGGAGCTTGCAGCTCTTGGCCGACCTTTCCAACTTGGGATGCTTTATGACTGTCGCAATGATTCCCTTATTCCAGGTATGACATTATGGGATCGTGAAGCCCTCCAAAATGACATTGATGAACGATCTCAACGTAACACAGAGTTTGAGATCATTGCCTCGGATTCCATTGAAGATAAACCATCTGCATTAAACGTAGAAGCCTCCCTGAAAGCAAGTTTCTTGGGGGGATTGGTGGAAGTGAAAGGGTCCACAAAATACCTTAAAGACACAAAGAATTCTAAAAACCAGGCTCGTGTCACCTTGAAATACAGAACAACAACCAATTTTATGCAGTTGACTATGAATCACCTTGGGCGAGGGAATGTAAAATATCCATATGTATTTGAACAGGGCACAGCCACTCATGTAGTAACAGCAGTGCTTTATGGTGCACAGgctttctttgtgtttgatcATGATGTATCGAAAATTGAAGACTTTCAAAATATTGAAGGCAACCTGCaagtaatgattaaaaaaatacctctGATTGCTATTGAGGGTGAGGGTTCACTCCAAATGACAGATGCAGAAAAAGCAAGTGTTGAGCAGTTTAGTTGTAGATTTTATGGTGATTTTGCTCTTGAAAACAATCCTGTATCTTTTCAGGATGCTATTAAAGTTTATGCAATGCTCCCAAAACTTCTTGGTGAACAGTTGGAGCATGCAGTGCCAATGCGGGTTTGGTTATACCCCTTGAAAAAATTAGATTCTGCTGCTGCCCAGATAGTTCGTCAAATAAGCATTGGCTTAGTCAACAGAGTACAGAACGTGCTAGAAAACTTTGTTGAGATAGATGTTCGATGCAGTGACTTGATGAAAGACAGCATCTGCAGTCAATTTTTGGACATGAccaaaaagataaaaaaattcAAGGAAATGTGCCTTGAGTACAAACTGGTTTTTCTGAAGTCTTTGTCAGGATTACTGCCATCTATTCGGGGAGGTGGAAAAGAGGAAAGTTTACTTGCAGATATAATGAGAGATAAGGAACAGTCTCCATTTAATAATCACTCCCTGGTGGATTGGCTGGATGACAAGCAAAGGGAAATCAATGTCCTCAGAATGTACATTAGTATGATGAAAGATACCAAGAttgtggattcaaagagtgagtTTGACAGAGTAGTCTTGGACCCTAAAGCCAagtatgttgtgtgttttacttTCACTTCTCTGCAACTTGAAGAATCCTATCTTTCAGAGTTATCAAATCATTTGAAGGATCTTCCCACCTGTCAGGGCAAATCACCAACATACAGAAAATCAGAGGAAGACAAACAGTGGTATTTCTCAGAATCTGTGTCtgaaaacatgagaaaaaagTCAAAGGCAAACAAGGACAAAATAGACACTGTATTTATAACTGCCTCTTCACCCAACAAGAGCCACACAGGTGCCAGTATTTACCTCTATGAAGAGGGAATCAAACAGAGTGAGCATTTTGAGCCTCTCTCAAAACCCGACAAGCCTGTTGCCTTGATGAGAGATCATGAAAGTATAACACTGCAGGTTCATCCTCCTAAATATGGGTCAAATGCTGTAAGCCAATACTTTATCTATTACAGTGTTCAAGACAAGAATGATTGGAAACTTGCGAAAACATCTACTAAGGTTGAATCATTTAGAGTGACAGGTCTACTTCCTAACACAGGGTACAAGTTCAAATATCAAGCAGTGTGCCAGGCAGGGATGGGTCCAACTGGTGCTGTTAGTGACAGTGTTAAAACACTAGCCACTGAGCCCCCTGGGCAACCTTCAATGGTTGCTGAATACTGTACAGAAATTACAATCAGCTGGAAAAAACCTACCATAATAGGAGATGGGGTGATGATCCAAAAGTACATTGTTGAATATAAAGAACACACTGTCTCTCCTGGAACTGAAGATAAGAAATACCTGTGGATGAAGATGACCTGTGCAGATGAGCACTGCACTATTACTGGGCTACAGCCAGAAACATCATATATTGTTAGAGTGAGTTGTGACTGTGGTGAAGCTGGTAAAAGTAAATATAGTCTGAAAGCTCACCTTTCAACATGTAAAGAAATCAAACGAATGGCTGATCGAATTAAGCTGCAAAGTGAGAAGATCAACTCTGGATCACTTTCGGTTTATAAGATCCCACTGCAGGAGATTCATATTGACCTTGatggaaactgtaaaataattgccTTTGGAAAagataacaagaaaaacaatcgGATCATTATGGTTCTTGGGGCAACTGGAGCTGGAAAAACAACCCTGATCAATGGGATGATAAACTATATCTTGGGTGTTGAGTGGGAAGATGACTTCCGCTTCAAATTAGTTGATGAACGTATAACAAAGTCCCAAGCAGAAAGCCAGACCTCTGATATCACTGCttatgaaataaattatcaaGAGGGACTTCAGATCTCATGTTCAGTCACTATAATTGACACTCCAGGATTCGGTGATACTCGAGGTATCAAACGAGATAAAATGATCACTGAACAGATTCGGAAATTTTTCACTGCTGAAAAGGGTATCAGAGATAgatgctgtGCATCCTTGGCTCGCTTAACCCAtgcacaaaaatatgtttttgactCAATCCTTTCCATTTTTGGGAAGGACATAGCAGAGAACATTCAGATGCTTGTGACATTTGCAGATGGGCAACGGCCACCTGTTCTTGAAGCAATTGATGCTTCTGGAGAGCCAtgtccaaaactgaaaaataatcttCCTGTTCACTTCAAGTTCAACAATTCAGCCTTGTTTGCAGATAGCAAGTTGACTAATAGAGACACAGATGACAATTATGAtgatgaggaagaggagaacAACTTTGATAAGATGTTCTGGAAGATGGGAGTGAGTAGCATGAAAAAGTTCTTCGCAGCCTTACTCAAGATGGAAACCAAGAGCCTACTTTTAACAAAGGAAGATCTCAAGGAACACAAACACCTGGAAGTTGCAGTTGAAGGTTTGCAACCTCAAGTCCAAGTTGGATTGGCAAAACTAGATGagatcaggaaaacaaaacagattataCAACAACATGAAGCAGAAATTTGTACAAATGAAAAGTTTGAGTATGAAGTTGAGCTGATGAAGCCTGTGTGCATTGACATTAGCAATAGTGGAAATTACATAACTAACTGTCAAAGATGTATGTATACTTGCCATTTCCCTTGTGGAATTGCAAATGACcaagagaaaagaggatgttGCGCAATGGATAGTAATGGATATTGCACAGCTTGTCCAGCTATAGCGGTGCATGTCCTGCTCCTCGGCTCTCACAGTCAAGCTCTTCCTAAGCTGGTAGGTGTTGTCTCCATTGGGCAGCACCTCTCCGCTCCACACCCCCTCCTCCAGAACAACCCCGTCCTCCCTGAACCACTGCACCATGATGGCCTGGGGGTAGAACCCAGTCACATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119712 lncRNA upstream 98399 3969829 ~ 3971683 (+) True G95992
TU119699 lncRNA upstream 135047 3933916 ~ 3935035 (+) True AMCG00015173
TU119696 lncRNA upstream 153348 3903699 ~ 3916734 (+) True AMCG00015170
TU119689 lncRNA upstream 198748 3871078 ~ 3871334 (+) True G95977
TU119684 lncRNA upstream 259022 3810565 ~ 3811060 (+) True G95972
TU119793 lncRNA downstream 122527 4234671 ~ 4283832 (+) True G96059
TU119798 lncRNA downstream 132243 4244387 ~ 4299500 (+) True G96061
TU119800 lncRNA downstream 139519 4251663 ~ 4255472 (+) True G96063
TU119795 lncRNA downstream 180915 4293059 ~ 4296312 (+) True G96060
TU119812 lncRNA downstream 187762 4299906 ~ 4300232 (+) True G96072
AMCG00015173 mRNA upstream 120662 3934978 ~ 3949420 (+) False AMCG00015173
AMCG00015170 mRNA upstream 153418 3914494 ~ 3916664 (+) False AMCG00015170
AMCG00015172 mRNA upstream 167744 3894791 ~ 3902338 (+) True AMCG00015172
AMCG00015171 mRNA upstream 181165 3884470 ~ 3888917 (+) True AMCG00015171
AMCG00015168 mRNA upstream 247619 3794466 ~ 3822463 (+) True AMCG00015168
AMCG00015185 mRNA downstream 76323 4188467 ~ 4196925 (+) True AMCG00015185
AMCG00015183 mRNA downstream 86342 4198486 ~ 4213829 (+) True AMCG00015183
AMCG00015184 mRNA downstream 103600 4215744 ~ 4218912 (+) True AMCG00015184
AMCG00015190 mRNA downstream 189491 4301635 ~ 4304037 (+) True AMCG00015190
AMCG00015189 mRNA downstream 193744 4305888 ~ 4363707 (+) True AMCG00015189
TU119711 other upstream 98399 3969829 ~ 3971683 (+) False G95992
TU119665 other upstream 427882 3641940 ~ 3642200 (+) True G95955
TU119395 other upstream 1102755 2965301 ~ 2967327 (+) False AMCG00015142
TU119344 other upstream 1246322 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 1261587 2806811 ~ 2808495 (+) True G95693
TU120035 other downstream 763977 4876121 ~ 4879896 (+) True G96264
TU120099 other downstream 909222 5021366 ~ 5022052 (+) True G96317
TU120210 other downstream 1276793 5388937 ~ 5391723 (+) True G96415
TU120220 other downstream 1314735 5426879 ~ 5464117 (+) False G96420
TU120218 other downstream 1320461 5432605 ~ 5434022 (+) True G96420

Expression Profile