RNA id: AMCG00015177


Basic Information

Item Value
RNA id AMCG00015177
length 2228
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00015177
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4181952 ~ 4184519 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAGCCTGCTGAGATCCAGGGTTGTGACTGAGGTCGTGGCACAGGTGCAAGGCATGCTGGGACAGCTGGATTCGGCTACCCTGGACATCGCCGTGACAGGGGACTCCGGGGCAGGCAAGTCCTCCTTCATCAATGCCTTTCGGGGGCTGGGGGATGAGGATCCTGAGTCGTCACCCACGGGTGTGACTGAGACCACTCTGGAGATTACCGCATACCCCCACCCTGGGCTCCCCAACGTGAGGCTCTGGGACCTCCCCGGGATCGGGACGCCCCGTTTCCAGGCCGATCGTTACCTCGAGATGGTGGGGCTGGAGCGCTTTGACTTCTTCATCATCGTGTCATCCGAGAGGTTCCGGGAGAACCATGTCCTGCTGGCCGAGGCCGTGCGCAAGTGGGGGAAGAAATTCTACTTTGTGCGCAACAAGGTGGAAAACGACCTAGAGGCGTGGGGGCGCCGCAAGATGCGGGGGGCGGCAGCAGGaaaggaggagcaggaggatcTGCTGGGAAGGATCAGGGCAGACTGCGAGGGAAGCCTGCGGAAGATGGGGGGAGGCATGGGGACAATGGCCATCACGGTCTTCCTCATTTCCTGCTTCCACCCCAACAAGTTCGATTTCCCGCGGTTGCAGGAGACGCTGGCGCAGGAGCTGGAGGGTCACAAGAGACACGCCCTCCTGCTGGCCTTGCCCAATTTGTCTGCCACCACCCTGCAGGGGAAGCGGAAGGCACTGGAGGGGGGGCTCTGGAGGAGGGCCATGTCCGCCTGCCTGTGCACTGTGGCGCCAGGGGGCCTGGGGGTGGGCGGACGGGCGGGGCTGTCCGGCAGCGTGCCTCTCCTTTGTAGAGAGGTGACCTCGAGCGCGGGCCGGCAGCTGAGCGAGCAGGGGGTGGAGGACATGCTGGGACAGATGGCCATGGGGCAGCAGGTGGTGGTGGGGATGCTGCAGAGCCGGATCCCTGTGCTGGGCTCCCTCACCTGCGGGGGCGTGTCTTTCGTGGCCTGCTATTGGCTTCTGAGCTCGGCCCTGGGGGACCTGAGCCAGGATGCGGAGAGGGTAATGCGGAGGGCGCTGCATGGGGAGGAGCTAGACCGCGAAGAAGTCGAGGATCCGGGATTCTTCTATGGGGACTGAGCCCCAGACCAAATCAACACATGGGGCTCACTTCATTACCAATAGATGGCTCCTAATGAAATACCATATTGTCTTAATATTATGTaaagtgttaattaattaatctgtaatGCAGGATGCCCCTGTCCCCAGTGTACACAACTTCCCTGGTTGACTGCTCCACAGCTGACTGGGGCCTCCAAAAAGATGCAAGCTGAACACACATCTGTAGAAAAGGatatcagttttaattttaacaggAATGCCGCAGTGACATCATCAATGAGCGCCAGAGGGCCGGCTCGGGACGTTCTTGTGTGCGATGCAGGAGATAGGCAGATGAGAGAGTGTTCAGGGTCATTCAGACAGTTTAGCAGCCTTATTttagcagagacagagaggggccTGATTCACACAGCCAGCTGGTACAGCAGCACCGACTGGGTTCAGTACAGTCCCGTTCAGGTCATTTTATTATAAACCCAGAGGGCAATTGGTTTGCAGGCAGGtctaaaaatgacaacaatgtAAGCAATcgttaaaaaacacacaaacatacaatacaaaacatacatgcaATACACCAACAACAATCATGGCCAGAGCATCATTCTCTCCGCCAAGCCAGTCTGagccaaaataaactctatttacCTTTATGCGTCTGTTGGGGCTGTCCTGGAAACTGGGACAGGAAGTCAGCCTGAGAAGATTGGTACACTGGGAAATGTGGTGTATGACAGTGTAGGAAACAGGGATTACCACGATATTCCCTGATATATCCGGTGGGTTTACTATAGTATTCAGGGTCTAGGGTAGGAAAGCACAGCCACAGCCCATTGAGCCCCTATGGAAGAGCACTGTGAGACTCGGGCACATTCAAAGCATCAGAAGCCTATGGCAATTTTCCCCACTTGCATGAGGGAGGACAGAATCTGCTTTATGTGTAGAGGGAAGGTGTCAGAAATccagataatatatattttcaaaacctgCTACTAATAACTTTTTTCTTCATGTCTGCATTGTAAAGAAAAATCCTGATGCACAATATACTGTGTGCCTGTgcctaataataatgataataataataaatgttcacATTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119835 lncRNA downstream 57989 4112256 ~ 4123963 (-) True AMCG00015180
TU119736 lncRNA downstream 142734 3903697 ~ 4039218 (-) False G96010
TU119735 lncRNA downstream 142734 3967029 ~ 4039218 (-) True G96010
TU119734 lncRNA downstream 144781 3901812 ~ 4037171 (-) True G96009
TU119860 lncRNA upstream 31208 4215727 ~ 4216894 (-) True G96110
TU119865 lncRNA upstream 67363 4251882 ~ 4255484 (-) True G96115
TU119876 lncRNA upstream 117113 4301632 ~ 4301940 (-) True G96125
TU119878 lncRNA upstream 130174 4314693 ~ 4314916 (-) True G96127
TU119879 lncRNA upstream 131678 4316197 ~ 4316936 (-) True G96128
AMCG00015179 mRNA downstream 12936 4167361 ~ 4169016 (-) True AMCG00015179
AMCG00015181 mRNA downstream 17963 4131402 ~ 4163989 (-) True AMCG00015181
AMCG00015180 mRNA downstream 69246 4110319 ~ 4112706 (-) False AMCG00015180
AMCG00015178 mRNA downstream 142736 4037418 ~ 4039216 (-) True AMCG00015178
AMCG00015182 mRNA downstream 154537 4025654 ~ 4027415 (-) True AMCG00015182
AMCG00015188 mRNA upstream 21756 4206275 ~ 4209529 (-) True AMCG00015188
AMCG00015186 mRNA upstream 71748 4256267 ~ 4257343 (-) True AMCG00015186
AMCG00015187 mRNA upstream 91251 4275770 ~ 4281629 (-) True AMCG00015187
AMCG00015192 mRNA upstream 106078 4290597 ~ 4293297 (-) True AMCG00015192
AMCG00015191 mRNA upstream 110914 4295433 ~ 4300203 (-) True AMCG00015191
TU119841 other downstream 1511 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 574760 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 831510 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 984763 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 992859 3186169 ~ 3189093 (-) True G95850
TU119954 other upstream 433192 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 593874 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 783531 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 801053 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 801053 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile