RNA id: TU119835


Basic Information

Item Value
RNA id TU119835
length 845
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00015180
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4110319 ~ 4123963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaattgctaCCCGCTCGATTTCGTGTTTTCTTTAGACCATCGGTCAATACAGCAACtgtattgaaaaacataatGGGAGTGTAATATAACTCTGAAGTGAGCGCACTTTTATGACAGTCAAACAATGGACTATTTCGTGTGGATAATAGAATGGATGATTTAATTTAACCACCCCTAATTCGAGGAGATGATCCGAGCTGTAGTCTTCTGTTTCCTCTTTTGCTTTCAGTGGGCCTGTGCGGCTGTTCATATCCTGGAGCACCATGGCATGGTGATCACAGATGGGACCAAGTTTTCGGAGTACATGCAGGTTTCAGCTGTGGATGGCGTGCCTTTCATTCGCTTCAATAGCAGTCTGTAAGAAGGAGTCTCCCTTGTAGACTGGATCAACAATTCATATTTACCAGGGACACTGGATGTGTGCTGTATCCTGACAATAGCACATATTCCTTTCTGACTCATGGTTATGATGCTAAGGACTTCATCAGCTTTGAcgtacaaaataaatcctggATAGCTGTGGATTCCCAAGCGGCTTTCTACAAGAGGAAGAGGGAAGAGAGCCAGGCTGATATCGAGATgctacataaaatgtataaaaatgagTGCAAAGAACAGGTGAAGACAATTCTGCATTATGGCCAAAGGGCGCTAGCAAAGACAGGTAAAAGATCCTGATCCTTAATCATGATAAAAGTAATAACTGCAGTGTTTAGCTCCTCTTGATTGTATTGTGAGGACACACCCAGTAAGAAAAGACAAATTGTTTGGCAGTATTTCAGCTGTAGTGTTTATCAAAAGATGGGCAATCCCAAAATGTAATATAGGTataactgaataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119736 lncRNA downstream 73038 3903697 ~ 4039218 (-) False G96010
TU119735 lncRNA downstream 73038 3967029 ~ 4039218 (-) True G96010
TU119734 lncRNA downstream 75085 3901812 ~ 4037171 (-) True G96009
TU119745 lncRNA downstream 141500 3969818 ~ 3970756 (-) True G96018
TU119690 lncRNA downstream 240922 3871076 ~ 3871334 (-) True G95978
TU119860 lncRNA upstream 91764 4215727 ~ 4216894 (-) True G96110
TU119865 lncRNA upstream 127919 4251882 ~ 4255484 (-) True G96115
TU119876 lncRNA upstream 177669 4301632 ~ 4301940 (-) True G96125
TU119878 lncRNA upstream 190730 4314693 ~ 4314916 (-) True G96127
TU119879 lncRNA upstream 192234 4316197 ~ 4316936 (-) True G96128
AMCG00015178 mRNA downstream 73040 4037418 ~ 4039216 (-) True AMCG00015178
AMCG00015182 mRNA downstream 84841 4025654 ~ 4027415 (-) True AMCG00015182
AMCG00015174 mRNA downstream 143276 3950144 ~ 3968980 (-) True AMCG00015174
AMCG00015175 mRNA downstream 207724 3902828 ~ 3904532 (-) True AMCG00015175
AMCG00015169 mRNA downstream 287219 3815946 ~ 3825037 (-) True AMCG00015169
AMCG00015181 mRNA upstream 7439 4131402 ~ 4163989 (-) True AMCG00015181
AMCG00015179 mRNA upstream 43398 4167361 ~ 4169016 (-) True AMCG00015179
AMCG00015177 mRNA upstream 57989 4181952 ~ 4184519 (-) True AMCG00015177
AMCG00015188 mRNA upstream 82312 4206275 ~ 4209529 (-) True AMCG00015188
AMCG00015186 mRNA upstream 132304 4256267 ~ 4257343 (-) True AMCG00015186
TU119671 other downstream 505064 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 761814 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 915067 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 923163 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 1131848 2978197 ~ 2980408 (-) True G95791
TU119841 other upstream 50916 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 493748 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 654430 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 844087 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 861609 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile