RNA id: AMCG00015188


Basic Information

Item Value
RNA id AMCG00015188
length 678
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00015188
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4206275 ~ 4209529 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTGAAGTTAGTACTTGGGGGTTCCAGGGTCGGAGGTCAGAGATCGGAGGCCAGACGTACCTTCTTGTCCAACCCGTAGGCAATGGCAGCGGCCGTGGGCTCATTGATTATACGCAGCACGTTGAGCCCAGCGATGGTGCCCGCATCTTTGGTGGCCTGGCGCTCATCTCTGTCCcacactttctctctgtccctctgtctctctgttgcTCTGTCTGCCTGCACAAGACCGCAGCATCGCTGACTGCAGCGGATCTCCGCAACCacatcacccccaccccccgcacGCCTTCATGGCACAACAGCATGGCCTTTGATCTCTCACCACATCTGCAGGAAGAGCAGCACCCCTCGCCCCCAGAGGAGCCCCACATTCAGCCCCATTCTGATTCTGAATGGCAGGCTCACCTTGCCAAGGTAGGCCTCGGAGATCTCCTTCATCTTGGTGAGGACCATGGAGGACACCTCCTCGGGGTAAAACGTCTTCATCTCCCCCTTGTACTCCACCTGCATCTTGGGCCTCCCACTATCATTGATCACCTTGAAGGGCCAGTGCTTCATGTCCGACTGCACTACCTGGTCATCAAAGCGCCGGCCAATCAGACGCTTTGCATctggaagggggtggggggggcagcaaAGAAGGACGAGAAGCAAGGCAGTGGTAGGGGGTAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119835 lncRNA downstream 82312 4112256 ~ 4123963 (-) True AMCG00015180
TU119736 lncRNA downstream 167057 3903697 ~ 4039218 (-) False G96010
TU119735 lncRNA downstream 167057 3967029 ~ 4039218 (-) True G96010
TU119734 lncRNA downstream 169104 3901812 ~ 4037171 (-) True G96009
TU119860 lncRNA upstream 6198 4215727 ~ 4216894 (-) True G96110
TU119865 lncRNA upstream 42353 4251882 ~ 4255484 (-) True G96115
TU119876 lncRNA upstream 92103 4301632 ~ 4301940 (-) True G96125
TU119878 lncRNA upstream 105164 4314693 ~ 4314916 (-) True G96127
TU119879 lncRNA upstream 106668 4316197 ~ 4316936 (-) True G96128
AMCG00015177 mRNA downstream 21756 4181952 ~ 4184519 (-) True AMCG00015177
AMCG00015179 mRNA downstream 37259 4167361 ~ 4169016 (-) True AMCG00015179
AMCG00015181 mRNA downstream 42286 4131402 ~ 4163989 (-) True AMCG00015181
AMCG00015180 mRNA downstream 93569 4110319 ~ 4112706 (-) False AMCG00015180
AMCG00015178 mRNA downstream 167059 4037418 ~ 4039216 (-) True AMCG00015178
AMCG00015186 mRNA upstream 46738 4256267 ~ 4257343 (-) True AMCG00015186
AMCG00015187 mRNA upstream 66241 4275770 ~ 4281629 (-) True AMCG00015187
AMCG00015192 mRNA upstream 81068 4290597 ~ 4293297 (-) True AMCG00015192
AMCG00015191 mRNA upstream 85904 4295433 ~ 4300203 (-) True AMCG00015191
AMCG00015194 mRNA upstream 155907 4365436 ~ 4371175 (-) True AMCG00015194
TU119841 other downstream 25834 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 599083 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 855833 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1009086 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 1017182 3186169 ~ 3189093 (-) True G95850
TU119954 other upstream 408182 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 568864 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 758521 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 776043 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 776043 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile