RNA id: AMCG00015193


Basic Information

Item Value
RNA id AMCG00015193
length 561
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00015193
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4408485 ~ 4424905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgctccctccctccctcttcatCTTATCCTCCATCTCCCTGTCCCTCCATCCCTCAGGCTCCTCCCAGCCCGCTCTGTGTCCATTCTGCAGTAAGGTGTGTGACAGCCAGGGGGCGCTGCGGAGCCACGTGTCGGAGCACACGCGTGGCTGGGGCCACATGTGTGAGGAGTGTGGCCGGCCCTTCCCCAGCGCCACCGCCCTGCGCCGCCACCAGCGCTCACACACAGgTGAGCTGTCATGTGAGTGTGACTACTGCGGCAGATGTTTCCGTGACGATAGCTCGCTGCGCAGTCACAAGCGCATGCACACGGGCGAGAAGCCGTACCAGTGCAGCAGCTGCAACAAGAGGTTCAGCCTTAAGCACCAACTGGACACGCACCACAGAGTGCACACAGgGGAGAAGCCATTCGAGTGCCGCCTGTGCGGGCAGCGCTCCCGGGATTACTCGGCCATGATCAAGCACCTGCGGACCCACAGTGGCGCTGGACCATACCAGTGCACTactTCAATTCAGCATCCTGATTTTGCAGGGCAGTCTTCAGCAAAGgGACGCCTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119901 lncRNA downstream 15505 4390840 ~ 4392980 (-) True G96148
TU119887 lncRNA downstream 64416 4343868 ~ 4344069 (-) True G96136
TU119885 lncRNA downstream 71214 4337009 ~ 4337271 (-) True G96134
TU119884 lncRNA downstream 75713 4332515 ~ 4332772 (-) True G96133
TU119883 lncRNA downstream 78676 4329610 ~ 4329809 (-) True G96132
TU119972 lncRNA upstream 243998 4668903 ~ 4669286 (-) True G96208
TU120042 lncRNA upstream 457164 4882069 ~ 4889321 (-) True G96271
TU120071 lncRNA upstream 469849 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA upstream 469849 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA upstream 469849 4894754 ~ 4911505 (-) False G96300
AMCG00015194 mRNA downstream 37310 4365436 ~ 4371175 (-) True AMCG00015194
AMCG00015191 mRNA downstream 108282 4295433 ~ 4300203 (-) True AMCG00015191
AMCG00015192 mRNA downstream 115188 4290597 ~ 4293297 (-) True AMCG00015192
AMCG00015187 mRNA downstream 126856 4275770 ~ 4281629 (-) True AMCG00015187
AMCG00015186 mRNA downstream 151142 4256267 ~ 4257343 (-) True AMCG00015186
AMCG00015195 mRNA upstream 11640 4436545 ~ 4452947 (-) True AMCG00015195
AMCG00015199 mRNA upstream 194459 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015202 mRNA upstream 245799 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015203 mRNA upstream 355080 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015209 mRNA upstream 445109 4870014 ~ 4871029 (-) True AMCG00015209
TU119841 other downstream 228044 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 801293 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1058043 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1211296 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 1219392 3186169 ~ 3189093 (-) True G95850
TU119954 other upstream 192806 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 353488 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 543145 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 560667 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 560667 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile