RNA id: AMCG00015202


Basic Information

Item Value
RNA id AMCG00015202
length 2095
RNA type mRNA
GC content 0.65
exon number 13
gene id AMCG00015202
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4670704 ~ 4679051 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCAAAGCAGCCTACTTCTCCCAGCAACCCCAGGATCAGGTTGTGGTGTCCGGCCAGTCCGTGACCCTGCCCTGCGTGATCGTGGGCTACCGAGGGATGGTTCAATGGACCAAGGATGGGCTGGCCTTGGGCGGGGAGAGAGATCTACCAGGTTGGACGCGGTACTCCATCATGGGCGACGCGCTGTCGGGAGAGCACAGCCTGCAGGTCGACGCTGCGGAGCTGGCGGACGACGCGGTGTACGAGTGCCAGGCCACGCAGGCGGCGCTGCGGTCGCACCGCGCTAAACTCACCGTGCTCGTGCCCCCAGGTGACCCCGTGGTGGAGGGCGGCCCCATAGTGAGGCTGAAGGCCCTCACTCCCTACAACCTGACCTGCCGCGCCCCCGGAGCCAAGCCAGCCGCCCAAATCACCTGGTACAGGGACGGGGAGCTGCAGGACTCGGCCATCTACAGCAAGacgCTGATGGACGATGGAAAGAGGGAGCTGGCTCTGAGCGTGTTGCCCGTGACCCCGGACGACAGGGACTCGGGGCGTACCTACACCTGCCGGGTCACCAACCCGGCCGCCCCCGCCGGGAAGCAGACCTCCGTGACCCTCAATGTCCAGCaccCCCCATCGGTCACCCTGTCTGTGCAGCCCCAGACAGTGATGGAAGGGTCCAAGGTCCTGTTTCTCTGCTCAGCTTCTGCCAACCCCGACATCACCGGATACAGgTGGGCGAAGGGTGGGCTGCCCATCTCAGAGGCCAATGGGGACAGCCTGGAGGTGACCGTGGACCCCTCCTACTTCACTGACCCTGTGTCCTGCGAGGTGTCCAACTCTGTGGGCAGCACCAACGTCAGCACCCTAGTGGACGTGCAGTTTGGACCCAGGCTGCTGTCAGAGCCCCGGCCGCTCTCAGTGGACGTGGGGATGGACGCGGCCTTCACCTGCTCCTGGACCGGCAATCCCCCTCTCACCCTGGCCTGGACCAAAGTGGGCTCCAGTGTGGTGCTGAGCAATGGCAACACACTGCAGCTGAAGGCCGTGACCCAAGATGACGCTGGCACCTACTCGTGCAAGGCCATCGTGCCCCGTATCGGGGTTGCAGAGAAGGAAGTCACACTCACCGTCAACGGCCCCCCCATCATCACAGCTGATGCCACCCAACACGCTGCCAAGAAAACCAAGGGCAAGTTGGAGTGTCTGGTGACCAGCAGCCCCCCACCCGACAAGATTgtgtggTCGTTCGGGGAGCAGAGTCTAGGGGGGGGCTCGGACGGGCGGTTCTCAGTTGTCACCGTGGTGACAGAGCGGGGGGTGATGTCCTCGTTGGTGCTGGCGGAGACGCTGCCCACCGACTTCACCCACCGATACAACTGCACCGCCTGGAACCGCTTCGGCTCCGGCACCGCCCTCATCACCCTGCAGGAGCAAGAagccctccctctggtggtgatCATTGGCGCAGCAGTGGGTGGCGGCTGCGTCCTTCTCATCATCCTCATCTCCGTGGCCTCACTGTGCTGCCGCAGCTCTGGCAAAGACCACGCCCCATTCCCAGCCCTGTTCCTTAAACTGGCTGAATCTGTGGGGGAACCCAGTGCTGCTTCTGTAGTCATTCAGTATTGCTCCAGCGGCTTCTCTGAGTACGTGCCCGCCGCCCGGTCCCTGTACCCCACTGCCCAGCTGCCCTCGCCCAGCCCCCTGTACACCCACTCTGCCCCCCCAGCTGCGGCCTCCACCGCCGCTGCTGCCGCCGTCGCCCCCCCCCGCCTGTATGACTTCACCCTGCGCTACGGCACGACCCCGGGGGTGCGCACGGCCTacgagcagcagcagcagcaacaggaGCGACTGGACCGGATGGACCGCATGTACCCCCCGGAGCCCCTCTACGGCGGCTCAGCCTACCTCCCCGCCACCTACGGCCGGGCCTTCACCAGCTACGTCAAGCCTGTGGCCTATGACAAGGTGGAGGCCTACGAGCACTCGGACCAGGCGAGCAAAGTGTCGAGCTCCTCGCGCTTCTCCTATGCCTCGTCCCACGTGTCCTCGCAGCAGTCGGACTACGGGCGCCCCTCGCAGCAGAGGATGCAGACGCACGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119972 lncRNA downstream 1418 4668903 ~ 4669286 (-) True G96208
TU119901 lncRNA downstream 277724 4390840 ~ 4392980 (-) True G96148
TU119887 lncRNA downstream 326635 4343868 ~ 4344069 (-) True G96136
TU119885 lncRNA downstream 333433 4337009 ~ 4337271 (-) True G96134
TU119884 lncRNA downstream 337932 4332515 ~ 4332772 (-) True G96133
TU120042 lncRNA upstream 203018 4882069 ~ 4889321 (-) True G96271
TU120071 lncRNA upstream 215703 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA upstream 215703 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA upstream 215703 4894754 ~ 4911505 (-) False G96300
TU120078 lncRNA upstream 215703 4894754 ~ 4911505 (-) False G96300
AMCG00015199 mRNA downstream 40482 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015195 mRNA downstream 217757 4436545 ~ 4452947 (-) True AMCG00015195
AMCG00015193 mRNA downstream 245799 4408485 ~ 4424905 (-) True AMCG00015193
AMCG00015194 mRNA downstream 299529 4365436 ~ 4371175 (-) True AMCG00015194
AMCG00015191 mRNA downstream 370501 4295433 ~ 4300203 (-) True AMCG00015191
AMCG00015203 mRNA upstream 100934 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015209 mRNA upstream 190963 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015208 mRNA upstream 192003 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015210 mRNA upstream 289239 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015211 mRNA upstream 307757 4986808 ~ 5083187 (-) False AMCG00015211
TU119954 other downstream 51440 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 490263 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1063512 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1320262 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1473515 3196421 ~ 3197189 (-) True G95854
TU119993 other upstream 99342 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 288999 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 306521 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 306521 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other upstream 306521 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017339 True 6887 mRNA 0.42 15 NC_007126.7 36977208 ~ 37020342 (+)