RNA id: TU119993


Basic Information

Item Value
RNA id TU119993
length 2811
RNA type TUCP
GC content 0.45
exon number 9
gene id AMCG00015203
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4778393 ~ 4802904 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAAACACGCGCAGGGGAAACTTCCTGATTGCTAACCGCTTTAAAGGAGTTCACACAGATGCACGCACTCACAAAGGAGGAAGAGCTTCAGAGCAAGCCTGCTGACAGCACTACAGCTGGGACACACGCAGAGACAAGTGCCTACATCTGAAAGaAGTCGAAACTTAATTTCACTTAATTGAGGGCCAGACAACAGATACCGATCTCTGGAGAGCTTCCTGTTTGACAGCGGTACAAGTGACATAAGATAACGTGATCAGGAGCTCTGACCTGACAACAGCCTCCTACAGAGCATATTCCAATATGATTCGACTGTTGGTACTCTTCCTGGTGCTGCAGACTGCGGCTGCAACGAAGGATGAAGAAGGATCTGCCGATTTCCCTGATGACGAAGACCTTCTGCTTGATTCTAACTTGACAAAGCTGGACAAAGCTCAGGGTGCTGACGACAAAGGAGGAGatGTGCCTATAGCGATCATCATTGCAGTCGTCGTATGTGTCGCTGCCACAGCAGTGCTCATTGCAGCTGTTTTCTTGGTACGACGTCGAATGCATAATCGGCAACAAGGggATTACGCCGTTCCTGCAGAGCAAGGACAGAAACCCACCATCTAAAGCAATTCCCAGGAGTCCCTGTGGAAGAccactgagggagagggagagggagagggggagagagagagagagacctgttACAATGCCACTGCCCATTCTCACCTAAACAGTTTCTCAGGTCTTCCAAACCTCACATCCCTTCCCCCTTCCCCCACCCTGGCCATTTCAGGCGTTCATCTCCCCTTGGTTCTCAGCTCCTCCATCAATCCCTGAGAGAGGTGTCCTTTACTCAAAACCAGCAAACCGAAACATACATGCCTAGTGTCCCACTTGGTATATATGTACATCTATATAAACGTATCTGGGACTGAGGGAGGTTCACATTGCCTGTTTCTCTTGGTCCTTTGTGCATGGAAAAGACCATGAAGGTCCCTTCCTTGTCCAGTACAAGGTGGGCTGTTAAAATCCAAAGGCACCTATTATGTTCTGATATGTGTATAGTAATgccattttggtttgtttttttaaggtgacGTTAATTAACTTCCCATCTTATTCCTGCTGGCGTGTGCATGTTGGCTAATTTCCACCCTATCTGCtgttcatacatttatttgttgttttccagtCCTTACTTGCAGCTGGTCTTAGCTCAGATAATTAACAGAGGAAAGTTAAGGAATTTGAAAAAGTCTGTCTGAAAATGATTATTAGAATATTGTTGTTTCTTCCTCTGGGAGGGAGTTTATCCGGCTGGATTAAAACTGACACACTATGTGTTGATCGCTGGTGTGAAacgagagagagtgagagagagagaggcaggatgATTCCTCTAAGCCAGGTTTCCTCATTAAATGAAACTGGTTTCGTcttatgatgaaaattgtgaCGCTGACAGGACTGGAATAACCTGACAACTAAACATACATGGAAATCAATGTTGCAACACCCCCACATCCTCACCCGCCTCCCACCCCTGTCAGCACCTCCTTAGTGAACTTGATCCCTAATCATCAAATAATGGTTTCACGCACCACAAGGCAAGGGGGTGGATTTCCAGAGACAGGTTTATGCAAAGGAATGGTTTGCTGTGGTCTCCAGCCCTGATGCTTCCAGGTCCTCAGTGATATCTGGATATCATATTACCTTTGACCAAAGCCAGTATTCAGTTGAGGTTGGGGATGGAAAGCTCAGTTTTGGGGCGAACGAGAGGGCAGGATAGGACTATGCTACCAGGGCTGGAGACACCTGGTGTAGAGAATACAACCAATCTGCACTAAATTTAAACTTCTCTGCTATGCAATGCTTCCAAGGGCCAGTTCACATCAGCAACATATTTTCCTGATAGTCCCAATATCCAACCTAATGGATGCCTAATGGATTCAATGCTTTGAAGGCCATCAGTTCAATCCATTTCAGTGTCAAAGGGaattctgacacacacacagacacacagacacggccTTTTAGACGATGCCATCTTACTAGAACTTCCCAGGGCCTTCACAGTGTATTATAATACACTGCACTTCAAAGCCCACAAGATGGGAGAGAAAATGGAACAGGTTGACTCAAATTATATACTCATGCTGAGaagaatataaaacacacattaccaAAAGTTGGAACTTCCCTTGAGCACAACTTTCAGTCATTTCTCTGTTGGGGACTTTCCAAATGAAACCCCTTCACCTGGTTTCCTATGCACTTTAACACACTCTCACGttcacatatacaaacacacacacacacacacaaggataTTTAAGCCATAAATCCTGAATGCATTAGAagacaggaaaacaggaaaataactcTTCTGATGAGAACTAACCTTTTTAAGCATCTGAATCCACTGCCATAAACATGTTCGTTTTGTGTGTATTGAAGAAGGTGAAGCGTCTGGCACTGGGAGTATATGTCAGGACTATACACaattgtgtcattcaatgtTAAATGTCAGACTGGGGCTCCTGGCTGTCAAAATGGGAAAGGGGCAATCTTCAATTGCTTTTCTGCTGTTCACAATATACACAGTGGGGAAGCAGATTGTTTAGATATTCTTCATTTGATCTACCAAAgttactttttagtttttagccCCTTTCACACTGGCACACCACCCTGGAGGGGGCACCCAGAAAGATGAACTGTGGAGCAGCCAGTGTAACTCTTGTATCAGTTGTGTCAGTTTTGACAGACTGGATGGCAAAAAGGGAATTGAAACCACCCTTCATTAGCAATGAATGAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119972 lncRNA downstream 109107 4668903 ~ 4669286 (-) True G96208
TU119901 lncRNA downstream 385413 4390840 ~ 4392980 (-) True G96148
TU119887 lncRNA downstream 434324 4343868 ~ 4344069 (-) True G96136
TU119885 lncRNA downstream 441122 4337009 ~ 4337271 (-) True G96134
TU119884 lncRNA downstream 445621 4332515 ~ 4332772 (-) True G96133
TU120042 lncRNA upstream 79165 4882069 ~ 4889321 (-) True G96271
TU120071 lncRNA upstream 91850 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA upstream 91850 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA upstream 91850 4894754 ~ 4911505 (-) False G96300
TU120078 lncRNA upstream 91850 4894754 ~ 4911505 (-) False G96300
AMCG00015202 mRNA downstream 99342 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015199 mRNA downstream 148171 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015195 mRNA downstream 325446 4436545 ~ 4452947 (-) True AMCG00015195
AMCG00015193 mRNA downstream 353488 4408485 ~ 4424905 (-) True AMCG00015193
AMCG00015194 mRNA downstream 407218 4365436 ~ 4371175 (-) True AMCG00015194
AMCG00015209 mRNA upstream 67110 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015208 mRNA upstream 68150 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015210 mRNA upstream 165386 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015211 mRNA upstream 183904 4986808 ~ 5083187 (-) False AMCG00015211
AMCG00015217 mRNA upstream 286930 5089834 ~ 5113520 (-) True AMCG00015217
TU119954 other downstream 159129 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 597952 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1171201 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1427951 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1581204 3196421 ~ 3197189 (-) True G95854
TU120086 other upstream 165146 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 182668 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 182668 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other upstream 182668 4985572 ~ 5005512 (-) False AMCG00015211
TU120133 other upstream 251997 5054901 ~ 5073806 (-) False AMCG00015211

Expression Profile