RNA id: AMCG00015207


Basic Information

Item Value
RNA id AMCG00015207
length 1464
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00015207
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4952437 ~ 4957869 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAAGGAAAAGCCGTGTTACTCACTGCCAACGGTCAAAAAGCTCCTGGAGCAGAAGCGCAAGAGGGAgacctcctcttcctcctcctcctcctcctctgcttcCGCCTCTGCTGCCAGCACAGGAGCCCCTGCTGCCACAACTCCGgTGCCAACACCAGTTCAAGCTATCCAACAAGGTGCTGCGAGCAGTTTCTCTGACGGCATGGGAGCAGCCGGTCACATGACCACCCCTGGGTACAGCGGATGGGTCAGTCCCGTCTCCCAGCTCCCCTCATCCCCACAGCAAGACTGCATCTTCACCAACCCGGCCGAGGACTATTTCCGGTGTCAGCAAGGTGGAATGGATTACAGGTCAAATCCTGTCTACACCAACTATGCCACCCAACAAACACCCACAGATACCAGCTACAGAGGCATCATGGCCATTCAGCCCTTTCCGGACTGCCCAGTGACGGCCACAGTCTCTGCCATTAGCCAAATGATGGTGCCACAGCCCCCCAGTTACTCCTGGGTCCCTCAGTGCCACTCCAGCACTGGGCACCAGGGCTTTGTGGGGCAGATGGATGCTGGGGTTCTGCAGGAGGCCAGGATGTTCTTGCAGGGGATGGACTACAGCAAGAAGATGTGGCAGGATGAGGACGGGGACACgATCCTGCACATCTACACTGCCAAGGGGCTGAGGGAGTATGCCTTTGCAGCTGCTGAGGACCTCGTCAAGATTGGCAGGCTAGACTCCAAAGAGCACAAGGGGAAGACTGCACTGCTGGTCGCTGTGACAGCCAACCAGCCTGAGATCGTCCAGGACCTCCTGCAGCTGGGGGCCGATGTCAATGCCTGCGATGTCAAAGGTCAGACAGCCCTCCACCTGGCTGCTACCTATGGCTTTCCCCGGGTCATGCAGGCGATTCTGTCAGCAGGACTCGGTGTGGACCTGGAAGCTCGCAATTTCGAAGggctgACCCCACTGCACTGTGCCACCATCTCCCACAACGGCACCATGAAGGCCCTGTCCACCCTGTTACCAGGGCAGACCAACGCCAGTCTGCAGAGCCAGGCCCAGGACAAGCTCTCATGCGTGCAGCTGCTCCTCAGCTGTGGAGCCTCTCACCTCAGTCAGGACATAAAGAGCAATAAGACAATGTTGCACTTGGCTGTGAAGGAGGGGAACCTGCAGCTGGTGCAGTACCTGCTGGGACTCAGCTTCCCTGACATGAATGCCTTCGTCAACTTGAAGGCCCACGGCAACACTGCTCTGCATATGGCAGCAGGTCTCCATGGCAGCTGTTACCAGGAGGACATGATCCGGCTGTTGCTCAGCGTGGGGGCCGACCCCAGCATCCGGAACCTGGAGAATGACCAGCCAGCCCACTTGCTGCAGagtggagagaggggagaacaGctcaaGCTCATTTTGAAGAAGGGGAGAGCGGCTTCTTCCCGTCGACGAATCGTATCCTTATAG

Function

GO: NA

KEGG:

id description
K14214 NFKBID; NF-kappa-B inhibitor delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119969 lncRNA upstream 282262 4669472 ~ 4670175 (+) True G96205
TU119968 lncRNA upstream 283047 4668893 ~ 4669390 (+) True G96204
TU119967 lncRNA upstream 283653 4668322 ~ 4668784 (+) True G96203
TU119928 lncRNA upstream 285588 4583697 ~ 4666849 (+) False AMCG00015197
TU119823 lncRNA upstream 558968 4388148 ~ 4393469 (+) True G96083
TU120111 lncRNA downstream 78169 5036038 ~ 5036271 (+) True G96326
TU120129 lncRNA downstream 118164 5076033 ~ 5077903 (+) False AMCG00015212
TU120152 lncRNA downstream 143219 5101088 ~ 5104581 (+) False AMCG00015215
TU120178 lncRNA downstream 236103 5193972 ~ 5194179 (+) True G96384
TU120221 lncRNA downstream 474736 5432605 ~ 5465434 (+) False G96420
AMCG00015205 mRNA upstream 90621 4846954 ~ 4861816 (+) True AMCG00015205
AMCG00015204 mRNA upstream 114067 4806896 ~ 4838370 (+) True AMCG00015204
AMCG00015206 mRNA upstream 146052 4804650 ~ 4806385 (+) True AMCG00015206
AMCG00015201 mRNA upstream 170007 4768539 ~ 4782430 (+) True AMCG00015201
AMCG00015200 mRNA upstream 186978 4743497 ~ 4765459 (+) True AMCG00015200
AMCG00015213 mRNA downstream 84632 5042501 ~ 5047188 (+) True AMCG00015213
AMCG00015218 mRNA downstream 106451 5064320 ~ 5065243 (+) True AMCG00015218
AMCG00015212 mRNA downstream 110178 5068047 ~ 5077892 (+) True AMCG00015212
AMCG00015215 mRNA downstream 126705 5084574 ~ 5119401 (+) True AMCG00015215
AMCG00015214 mRNA downstream 171472 5129341 ~ 5136836 (+) True AMCG00015214
TU120035 other upstream 72541 4876121 ~ 4879896 (+) True G96264
TU119757 other upstream 852297 4089201 ~ 4100140 (+) True G96030
TU119711 other upstream 980754 3969829 ~ 3971683 (+) False G95992
TU119665 other upstream 1310237 3641940 ~ 3642200 (+) True G95955
TU119395 other upstream 1985110 2965301 ~ 2967327 (+) False AMCG00015142
TU120099 other downstream 63497 5021366 ~ 5022052 (+) True G96317
TU120210 other downstream 431068 5388937 ~ 5391723 (+) True G96415
TU120220 other downstream 469010 5426879 ~ 5464117 (+) False G96420
TU120218 other downstream 474736 5432605 ~ 5434022 (+) True G96420
TU120766 other downstream 2039764 6997633 ~ 6999583 (+) False AMCG00015293

Expression Profile