RNA id: AMCG00015208


Basic Information

Item Value
RNA id AMCG00015208
length 1059
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00015208
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4871054 ~ 4872720 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTATAACATATTCGTGCCCCCTCTGGAGTATCAGTTCCTCTATGATTCAGTCTTTGTCTTCGCCTCTCAGCCCACCCGTTTCAGCCCCAAGACCCAGGCCGCTGACCTCAAGGCTGGGCAGTGGAAGGAGATCTTAATGACTCAGACCCTTGCACTGGTCATCACCTCTTCACAGGCTGTGCAAGTCCTCTACTACTGTGCAGGCGGTATGTTGAGCGATTACATAGCCTTTGACCCCTTCATGATGAACATCCTGCCCTCTGACCTCGATGACAAGAAGCCCTCCCTGAACTGGCAGTCAGTGGAGGGGACAGACTATTCCTGGGCTCACTATACCTATGAGAAAGGAAGGGGTCACCACACTGTGGGGCACCCAAGTGCATCCATCAGGGTCTACAGTGTGGGGACCGGAGACAGAAATAGCTACAGAGCCCCTGCAGTTTGTGGCTGTGAATATAAGACCCTCAGCACAGCCATTTCAAATTTACCCCTGCAGATACAAGCTCCACCAAGTGCTGGGCTTGGGGCAACCCACACTACACTGGCTTTGACTAGAGGAAGGCAAATGCACCTACACTGTGGCCAAGCCCTGCGAGGCAGGGAAGGACCTGCCAGACTTCTACATCCAAGCCAAATCGAGAACCACGGCAACAACAAGATGACCTGGATCAAAAATTTGGATGTCTCCATTTATGGACTCAAGATATCCATCATCCAGAAACAGAAAGAAGTTGTGTTAGTGAACATGAAGCAGACCTACCTGCCTGTCACCTTGGCAGATGGCAAGTTGCAAATCTTTCAGAGTGGCTCAGAGGCTGTTATCAGCACTGACTACAGGCTGAAGGTCACCTTTGACAGGAACCACTACTTGGAGATCAATATTCCCAACACCTTCCAGAACAAGATGTGCGGCCAGTGCAGCAGCTTCAACGGCAACCTGGCCGATGACTTTGTGATGCCTGATGGCAAGCAGGCTGCCGACACCATGGTCTTCGGAGCCGGCTGGCAGGTGCAGGACGGGGATCCCAAATGCTCATACGACTGTGATGGCAAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119972 lncRNA downstream 201768 4668903 ~ 4669286 (-) True G96208
TU119901 lncRNA downstream 478074 4390840 ~ 4392980 (-) True G96148
TU119887 lncRNA downstream 526985 4343868 ~ 4344069 (-) True G96136
TU119885 lncRNA downstream 533783 4337009 ~ 4337271 (-) True G96134
TU119884 lncRNA downstream 538282 4332515 ~ 4332772 (-) True G96133
TU120042 lncRNA upstream 9349 4882069 ~ 4889321 (-) True G96271
TU120071 lncRNA upstream 22034 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA upstream 22034 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA upstream 22034 4894754 ~ 4911505 (-) False G96300
TU120078 lncRNA upstream 22034 4894754 ~ 4911505 (-) False G96300
AMCG00015209 mRNA downstream 25 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 83117 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 192003 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015199 mRNA downstream 240832 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015195 mRNA downstream 418107 4436545 ~ 4452947 (-) True AMCG00015195
AMCG00015210 mRNA upstream 95570 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015211 mRNA upstream 114088 4986808 ~ 5083187 (-) False AMCG00015211
AMCG00015217 mRNA upstream 217114 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 246478 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 290687 5163407 ~ 5166705 (-) True AMCG00015220
TU119993 other downstream 68150 4778393 ~ 4802904 (-) True AMCG00015203
TU119954 other downstream 251790 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 690613 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1263862 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1520612 3349879 ~ 3350442 (-) True G95921
TU120086 other upstream 95330 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 112852 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 112852 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other upstream 112852 4985572 ~ 5005512 (-) False AMCG00015211
TU120133 other upstream 182181 5054901 ~ 5073806 (-) False AMCG00015211

Expression Profile