RNA id: TU120086


Basic Information

Item Value
RNA id TU120086
length 1942
RNA type TUCP
GC content 0.42
exon number 5
gene id AMCG00015210
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4968050 ~ 4976350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTTTCAAACACACCTCTGCAACccctgcagtgtgtttgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagacgagacagagagagagagagagagagagagagagagagcatcaaACCTAAGCTCCCGACACACTGCAGTCATGGCTACGACAGGAGATTCAACGATTCAAAGTGATTTCGAATATGATTATGAAACCCTGAGGACCACAGGAGTGATTCTGGCTGTCATCATGTTTGTGGCAGGGATCCTCATAGCCCTGACGGCAGCCCAGTGGAAGGCCCTCAGCCACCAAAGACAGAAGtgccACCTCAGACCGTATagagggagagcaggaggtGGGGAGGGGAGTGGCTGTCAGTTGGAGGAGACccaacacagagagggagagggagagaagccCCAGAGAGCCCCTCTCAGACAAACTGGAAAACATCTACGCCTTCCCAACCAGCATCGGCTCCATGCAGAAACGCCTTTGTCAGTTCCAGCCATAATCCAGGCAATCTGTTTATCCCATTTATATCCATTGTGAACACCACCTCAAAGTGCTTTCACACAGTCTGGGTGCAGGAGGGAACGCAGTTAGTGCAGAGGATAAAAACTATAGGGCTTTGGATGTCATTCAAGTCCTTTTACTAgttgatttttctttcacaCAATCAAGCAGTACACTTTCTTATACTTTCCCCAGGCTAGTCTGACCCAATCCATCCCATTTCATAAATCAGGCAGCACTAATTAAATAGGCACAACCGTCCTATAATACTATAGACTTAGAAATTACAATGTTCTGAGGGCTGCACCTGCATAacagtgaacattttgaaatgttctacTTCACGATCAAGTGTACTCTTTATCTTTGTCAATttgactaatttatttattcaaatgccATTGCTTGTTTACATTTAGCAGCAGCATTTTCTAAAGTCAAAGAAATATGAAAGGAATCAATTGAAAAGTAACAGTGAAGCATACGATTCTCAATCTGCGTCACTGGTATCCAAATTAGAAGTTCTGGGATATTGTCCCCACTTTGCTGGGATTTAAAACAAGTTAAGGGTTTGACATTCCCACTGGGGTCTGAATGTCATATATGGGCCAAGTTTAAATACATGAAGCCTATAGTATGGGGTAATCAAGGGGTTAAATGTGTTCGAGGCCCAACTGAATAGAAATCTGTTTGCAAGCTTTCTTGCACCAGCTTTTATTCACCCAAGACTGCAAGCTTTCTGAAACCAAAGACTGAGTACAGAAAAGATCACACTAAGACAAAGGTAAATTAATGGGATTAAATTAGCCCTCAATGATGGCTAAATCCATCTGCAACAAAAACGCAAAATAGACATCACAAAGGCTGGGGCACTGTGGTCACCTCTCGCAGGTGACGCTATATCTGCAGAATAGCTCCCTCTCAGCTGTGCCACTGTGtggtggaaagaaagaaagacacgGGTTGATTGCACCAGTCTACATCCAACCGCCACAGCTTTTCCTCTCCCTCAACCTACTTCCAGGCCGATTGCATGaagagacaaaaatatataaatatataagatgTAGCACTTTTTAATGTACGAAATGAATGCACTAGTGATTTAACCATGTAGGTCAGATTGTGTATGAGGAAAAGTGGAGAGTTTCTTTTTTCCAGAagggtggggcggggggggggacTGACACtaagatgtattttatgtaaaacataaattatacgTTTCATTAtaagttttaattattcatttttaaagcctCATTTACCCCATTCAGCCTTGTGTAAAACTGAGCATACAATGTGTAATCAAGTgagatttgattgttttattttctatgagatgcaaaaatacaaaataataaaacaacttaaacttctgatgaacaattatttcaataaacacTTTCAATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120071 lncRNA downstream 56545 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA downstream 56545 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA downstream 56545 4894754 ~ 4911505 (-) False G96300
TU120078 lncRNA downstream 56545 4894754 ~ 4911505 (-) False G96300
TU120042 lncRNA downstream 78729 4882069 ~ 4889321 (-) True G96271
TU120089 lncRNA upstream 9222 4985572 ~ 5005512 (-) False AMCG00015211
TU120092 lncRNA upstream 9222 4985572 ~ 5014397 (-) True AMCG00015211
TU120096 lncRNA upstream 40036 5016386 ~ 5016609 (-) True G96314
TU120101 lncRNA upstream 44910 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA upstream 44910 5021260 ~ 5022065 (-) False G96318
AMCG00015208 mRNA downstream 95330 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 97021 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 180113 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 288999 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015199 mRNA downstream 337828 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015211 mRNA upstream 10458 4986808 ~ 5083187 (-) False AMCG00015211
AMCG00015217 mRNA upstream 113484 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 142848 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 187057 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 221737 5198087 ~ 5213200 (-) True AMCG00015219
TU119993 other downstream 165146 4778393 ~ 4802904 (-) True AMCG00015203
TU119954 other downstream 348786 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 787609 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1360858 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1617608 3349879 ~ 3350442 (-) True G95921
TU120088 other upstream 9222 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 9222 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other upstream 9222 4985572 ~ 5005512 (-) False AMCG00015211
TU120133 other upstream 78551 5054901 ~ 5073806 (-) False AMCG00015211
TU120336 other upstream 779304 5755654 ~ 5757109 (-) False AMCG00015244

Expression Profile