RNA id: AMCG00015211


Basic Information

Item Value
RNA id AMCG00015211
length 972
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00015211
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4985572 ~ 5083187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTGGGGAATGAGATATTTCAAGCGAGTGGTTGTGCCTACCTTCTAAGGAAGAGGACCGTCAGCACTGCTATGGCAATGGCCAAAACTGGGACAGTAAGAGCCGAAGACAGGACAGCCACACTCAGCCTGGCTGTGGGCGACGCGGGTGAGGAATCGAGGCAGCGCCTGCAGCTGCGCGGTTCCGCACTGGGTGCATCGGAAGCGGCCGCTGTTTCCCGACACCTCCGCCCTTCGCGAAAgGATGTTGTCCTGAAATTGCTCCAGTATGAGGCCTCTACCAACGTGGCCGACATCAAAGGCTGTTTCCCACTTCACCTGGCCACCTGGAAGGGAGATGTGGAGATAGTGAAGATCCTCATTCATCACGGCCCCTCTCACTGCAGAGTCATTGAACAGgaattgaggaaaacaatacaaggaccaagACTCGGAAAAATGTCCAACACTTCCATGGAGCAAACTGTGATTGGAGTGTATGTCATACAGAAGGAGGGTAAGGAGCCTGGAGATGACCCACAGGACATCGGTGTCCTGATTAAAGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGcCTTTTAAATGCCCTGGATGTGGCTGCAGAGACGATTGTTCGGCACTGGCTCTCCATGTGGCGTTCTGCCgggAGGCTAAACTCCAACATCGTTCTCACCCTTAGTCTGGATGAGATGTTTAATGCCTATTACTTAACAGTTCATTGGAGGTTTGGGGACAGGGGCTGGGCTACGACCAGCACGGCAGCCCTTTTCATTATGTCCTACGGAAGGCGGGAGAGGAGGGACAGAGTCAAAAAGATGCAGAAATGCACGGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAAACTGGAGAGCCTGACGAGGAGGCTGGGAATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120071 lncRNA downstream 75303 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA downstream 75303 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA downstream 75303 4894754 ~ 4911505 (-) False G96300
TU120078 lncRNA downstream 75303 4894754 ~ 4911505 (-) False G96300
TU120042 lncRNA downstream 97487 4882069 ~ 4889321 (-) True G96271
TU120169 lncRNA upstream 73600 5156787 ~ 5157140 (-) True G96375
TU120179 lncRNA upstream 110636 5193823 ~ 5194138 (-) True G96385
TU120256 lncRNA upstream 312706 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 314907 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 325177 5408364 ~ 5451534 (-) True G96454
AMCG00015210 mRNA downstream 10577 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 114088 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 115779 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 198871 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 307757 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015217 mRNA upstream 6647 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 36011 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 80220 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 114900 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 151945 5235132 ~ 5241035 (-) True AMCG00015227
TU120086 other downstream 10458 4968050 ~ 4976350 (-) True AMCG00015210
TU119993 other downstream 183904 4778393 ~ 4802904 (-) True AMCG00015203
TU119954 other downstream 367544 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 806367 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1379616 3604603 ~ 3607192 (-) False AMCG00015164
TU120336 other upstream 672467 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 966290 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1294703 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1615670 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1834579 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile