RNA id: TU120091


Basic Information

Item Value
RNA id TU120091
length 980
RNA type TUCP
GC content 0.47
exon number 10
gene id AMCG00015211
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4985572 ~ 5083187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGACTCCGCTACTAAACCTGAACTTGGAATAGATCCAGGGACCGGGCTGAGTTACAGACTGGCCAGCTGTTGGAGCTCCTCACAGCACTCACAGCCCCAGCGCTTTAAAGACGTCGGCGACACTACACGCGAAACAgcggaattaaaaaacaacaaacttaaGACCCAACTCCGCAAAATCCGAATCAGAGCAGGGACATTGCTTAGACTGTAAGACTtggatttttctttgtttgggtGTATTTAGTCGTTTTCTTTATTGCAGTCGCTGATTTAAAAAGACACGCTTCTTTATTTTCGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGGGTCCCCGTTTGGCAGGTTTACGCATGCAGCATCCAGTACTGAAGACCTGGATAGAGACCAGCACGGCAGCCCTTTTCATTATGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAgCCGAAAATGTCGCTGCAAGTTCAATCAGCAACACCCAACTGGAGAGCCTGACGAGGAGGCTGGGAATCTGAGAGCATCTATCAGACGGATGTCGAGCAGGAAGCGATAAGCAGTGGACAGGCTTCAGGTGTCCCCTGAGATGCCAACCAGTGCCACTATGATGCCGCGTCACACAGGGCAGCACACAGCACTGTTTCTGTTTGCAATCGTAGCTAGTTGTGCGCTGGAAGTCAGTTTTGAATGCGCCAACCTAACTCATCTGCTTCTGCTACTTTTTCATCTTTGactgtctgtctatctcttgctctcatatttttttctatacaaaaggaacaaaaagaTATGTATATCGAAAGCATCAAGAATAAGGAGCATCAACGTTGAATCAGAAGTgttctattgttttttctccctgCGCTGCAAGCgaactataaataaaaacattttccaaataattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120071 lncRNA downstream 74067 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA downstream 74067 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA downstream 74067 4894754 ~ 4911505 (-) False G96300
TU120078 lncRNA downstream 74067 4894754 ~ 4911505 (-) False G96300
TU120042 lncRNA downstream 96251 4882069 ~ 4889321 (-) True G96271
TU120096 lncRNA upstream 10874 5016386 ~ 5016609 (-) True G96314
TU120101 lncRNA upstream 15748 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA upstream 15748 5021260 ~ 5022065 (-) False G96318
TU120114 lncRNA upstream 32778 5038290 ~ 5038491 (-) True G96329
TU120169 lncRNA upstream 151275 5156787 ~ 5157140 (-) True G96375
AMCG00015210 mRNA downstream 9341 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 112852 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 114543 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 197635 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 306521 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015217 mRNA upstream 84322 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 113686 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 157895 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 192575 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 229620 5235132 ~ 5241035 (-) True AMCG00015227
TU120086 other downstream 9222 4968050 ~ 4976350 (-) True AMCG00015210
TU119993 other downstream 182668 4778393 ~ 4802904 (-) True AMCG00015203
TU119954 other downstream 366308 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 805131 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1378380 3604603 ~ 3607192 (-) False AMCG00015164
TU120133 other upstream 49389 5054901 ~ 5073806 (-) False AMCG00015211
TU120336 other upstream 750142 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 1043965 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1372378 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1693345 6698857 ~ 6700357 (-) True G96766

Expression Profile