RNA id: TU120092


Basic Information

Item Value
RNA id TU120092
length 2255
lncRNA type sense_over
GC content 0.46
exon number 11
gene id AMCG00015211
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4985572 ~ 5083187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCACCCTTCCTGGCTGCCTCTGCGTAACGTGGTAtcctgaggagaaaaggaaagttgATTTGAGAAGAGATACCGGACTGATTTCCTATTTTTCCTACTTACCTGACAGGGCTGGTGGAGACGGTGTGTTCCCCCGGTGGCCAGCTGGGCCTGAGACGGAAagcagtgcacctgtggagagacacGCTGGGGAAAAGGATAGCGGAGGGACGTGAATGGGGAAAATAACCACTGTAGTATGTGTGGTTTCACAcggcggtaggtgagggtcaatgtctttgaactgaatgcgtgccgctatcgggagccagtggagggagcggagcagtggagtagcgtgtgcgaatcggggcagagagacaccagacgagccgcagagttctggatgagctggagcggcgggtagtggatgcaggcaggccggccaggagggagttgcagtagtccaggagggagaggaccagtgactggacaagcagctgagtcgagtagtcgAAATGCATCACAAAATAAAGCAGTGTCCCCATGCTCTGAGATTTGTATGCACCTCCTCGACAATGCATGGTCAATAAGGAGTTCATATGCATATCAACTGTACCTCTGCTATCTACATTATTTGCTGAGCTTGACTGGTATTCTCCACACATGATGGAGATCATTCAATGCAAAGGTGGGGCAGCTGGAAGAAAAATTAGATCTCATGGTGGCCATGTCCAAGGTTTGTATTAAAATAGGTAGATCTATGCATGAGAATAAGTGTCTATACATATGGTAGGCAAAAGTGCCAAGAGTATGCAGGTTTTCACTTAATCAAAACACTTAATCATGTGAGTATACTGATTACATCAGCTTCAGCCAGAGATGAGGAAGTTCACATGGTGAACTTTTTGGTCAgaatgaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctcatTTTGTGTCTGATTTGGATGAGATCTTGTATAGATGTTGAGTACTTGCCTTTTGGGTTCCTGAGACCTAAGTATTGTCTACCACACTAACCATGCTCAAAACTTTTGCAAACCTTGCAGTTTGCTATCAAAACTGCAGAGTTCTTTTTTCAACCTACTGCCTAAAATGCTGAATATTGTCAGAATGGATGACACGATACATACAAGACAAGCATGTGTCCTCAAGTCCTTCTGCACCTACCACAATGAAGACCATGAGAAACTTGTGAAGGAATATATGGTGAGTTACATACACTAGATGTTCCTTCCTTCTCTAGCACTCCAATGAGTGCTTTCAGTGCTCACTGGGATGTCCAACCTTAGATTTCACTTTGTACTCTTCTTGTAATGTATGCATCTGTATTACTTCTTTACAGCTCCAACTATATGActtaatttgtactttttatgaaattgtaaatgtttgtctTACAACTGACAATTGTATGATCAGCAATTGGCATATTTAACTTTGTCTTGCCTCCAGTCTCTTGCCACACTTTGTCTAGACTCGGAAAAATGTCCAACACTTCCATGGAGCAAACTGTGATTGGAGTGTATGTCATACAGAAGGAGGGTAAGGAGCCTGGAGATGACCCACAGGACATCGGTGTCCTGATTAAAGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGCAGCATCCAGTACTGAAGACCTGGATAGAGACCAGCACGGCAGCCCTTTTCATTATGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAgCCGAAAATGTCGCTGCAAGTTCAATCAGCAACACCCAACTGGAGAGCCTGACGAGGAGGCTGGGAATCTGAGAGCATCTATCAGACGGATGTCGAGCAGGAAGCGATAAGCAGTGGACAGGCTTCAGGTGTCCCCTGAGATGCCAACCAGTGCCACTATGATGCCGCGTCACACAGGGCAGCACACAGCACTGTTTCTGTTTGCAATCGTAGCTAGTTGTGCGCTGGAAGTCAGTTTTGAATGCGCCAACCTAACTCATCTGCTTCTGCTACTTTTTCATCTTTGactgtctgtctatctcttgctctcatatttttttctatacaaaaggaacaaaaagaTATGTATATCGAAAGCATCAAGAATAAGGAGCATCAACGTTGAATCAGAAGTgttctattgttttttctccctgCGCTGCAAGCgaactataaataaaaacattttccaaataattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120071 lncRNA downstream 74067 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA downstream 74067 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA downstream 74067 4894754 ~ 4911505 (-) False G96300
TU120078 lncRNA downstream 74067 4894754 ~ 4911505 (-) False G96300
TU120042 lncRNA downstream 96251 4882069 ~ 4889321 (-) True G96271
TU120096 lncRNA upstream 1989 5016386 ~ 5016609 (-) True G96314
TU120101 lncRNA upstream 6863 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA upstream 6863 5021260 ~ 5022065 (-) False G96318
TU120114 lncRNA upstream 23893 5038290 ~ 5038491 (-) True G96329
TU120169 lncRNA upstream 142390 5156787 ~ 5157140 (-) True G96375
AMCG00015210 mRNA downstream 9341 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 112852 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 114543 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 197635 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 306521 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015217 mRNA upstream 75437 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 104801 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 149010 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 183690 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 220735 5235132 ~ 5241035 (-) True AMCG00015227
TU120086 other downstream 9222 4968050 ~ 4976350 (-) True AMCG00015210
TU119993 other downstream 182668 4778393 ~ 4802904 (-) True AMCG00015203
TU119954 other downstream 366308 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 805131 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1378380 3604603 ~ 3607192 (-) False AMCG00015164
TU120133 other upstream 40504 5054901 ~ 5073806 (-) False AMCG00015211
TU120336 other upstream 741257 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 1035080 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1363493 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1684460 6698857 ~ 6700357 (-) True G96766

Expression Profile