RNA id: TU120133



Basic Information


Item Value
RNA id TU120133
length 1234
RNA type TUCP
GC content 0.45
exon number 4
gene id AMCG00015211
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4985572 ~ 5083187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATTAAGCCCAACCATTAAAGGTCCTAAAACACAGAGCCCCTGTGCACCAGCTGTGAGAGGAGAGACAGCGAAGAATAATAGAGCTTGAAGCAAGCGCAACACCCCATACACTCATGTATGTGGATCGGGCCGGCTTCAACCTTTCCAAAGGAGACGAGGGAGGAACCTCATTGgGATGTTGTCCTGAAATTGCTCCAGTATGAGGCCTCTACCAACGTGGCCGACATCAAAGGCTGTTTCCCACTTCACCTGGCCACCTGGAAGGGAGATGTGGAGATAGTGAAGATCCTCATTCATCACGGCCCCTCTCACTGCAGAGTCATTGAACAGgtgcactaCGCTCCGCCTCAGGCCCAGCTGACTACAGGGGGGACACACCGTCTCTACCAGCCCTGCAAGATGAGTAGAAATAGTACAAAATCAGTCCAGtatctatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaatgcatttcaaaaaagttataaattggaGTGGTCCAGGAGCCAGGAAATGTGTGCAGCAATCAACCAAAACTCATTCAAAACCAGAGAGAGTTTTCCCATAGAACATCAGAGTACATATCCTGCTATGAACAATTCCCCTGTTCCAATCAGCGGAGCTGGGGGGTTGCTGTGGGCCCTTAATTTGCGGCTGTGGGCCCTAAGCAGTCGCTTATGTCCCTTATGCCTAGAAACGACTGTACACtgtgcactgtatttaaatgtcttccACATTGTTACATTCGTTATTCATTATAGCATCAAATATGAAGCATTTATGATGATGTGCCACTAAttggtttttttgtttttttgtttttttgagtgtgcctgtggcagggagggggttaattgtccctccctgcctgctcatggactgcaggtggccGGGGTGATTGAtaaattaaggtcaatcaaccccagccacctgctatataaggaggcctcagcctcccATTAGGTGTTGGAGGTGTTGGAGGAGTTGGGTAGTTGGGTGTGGAAGGAAAACGTTACGTTTTTTCACAGTGAAGACCAGGTCCAGcctgtgtatttttctttgagttttgtgtatctgtttgtttgGCCATCgtgccagtttattttgtttatttaataaagcctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120114 lncRNA downstream 16410 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 32836 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA downstream 32836 5021260 ~ 5022065 (-) False G96318
TU120096 lncRNA downstream 38292 5016386 ~ 5016609 (-) True G96314
TU120092 lncRNA downstream 40504 4985572 ~ 5014397 (-) True AMCG00015211
TU120169 lncRNA upstream 82981 5156787 ~ 5157140 (-) True G96375
TU120179 lncRNA upstream 120017 5193823 ~ 5194138 (-) True G96385
TU120256 lncRNA upstream 322087 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 324288 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 334558 5408364 ~ 5451534 (-) True G96454
AMCG00015210 mRNA downstream 78670 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 182181 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 183872 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 266964 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 375850 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015217 mRNA upstream 16028 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 45392 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 89601 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 124281 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 161326 5235132 ~ 5241035 (-) True AMCG00015227
TU120088 other downstream 49389 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 49389 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 49389 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 78551 4968050 ~ 4976350 (-) True AMCG00015210
TU119993 other downstream 251997 4778393 ~ 4802904 (-) True AMCG00015203
TU120336 other upstream 681848 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 975671 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1304084 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1625051 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1843960 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile