RNA id: AMCG00015213


Basic Information

Item Value
RNA id AMCG00015213
length 1258
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00015213
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5042501 ~ 5047188 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGCTCTGGAGTGCCACATGTGTGACGCTAAAACAGCACCCTTCACCGgcaaaggaaaagagaaaacattcaACCTTGGACTGGTCCCAGCACTTCTGCAGAACACAGATGGCAGTGTGCTGAAAGGCTGCATGTCAAAGAACATGTGCAGGGACATGACCAGTTCGGCATTAAACTCAACCGACAGCACGTTCTCCTGCAACAACACCGGGAGCCTCAGACAAAGTggactactgctgctgctgctctctctggTGTCAGTCAGACTCTTCTACTGACCACTATGGGAGACAGCTAGTCATTTATCTTTTTAACAGCTGATCACAGAGTGGAAAAGTATGTCTACATGCTTTACTTCTTTCTTCTTATTGAGATTATTGAGGTCTCACTAATCAAATATTCACTGATGGCTTTAGTGTTTTTTCACAGAATGTCCCTTGTTGTTAAAGAAGTTGATCACGTACCTCTAAATGTAGATAGAGCATtgcaagaaatacataaaaacaacaaatatatacattaatttaaaagagaATATAGCTTTCATACAGAACCTCATAATACTGAAAGCACAGTTTTATTTGGTTAATCAAGTGAGATTataaattttaataaaaactttgGTCCTTTTGGTGCTTCTTCTTTTGTTAATATTGTATTCAACCACAGAGGGTTAACAGtgcacccacaccccaagggCTGACAAGTTATTGTTGACTTTCCATCCCCCCTTGTGAGGGCTGGTAAAGGGtgcccaccagagggaagaccacagacaatattaaaatatgaaaaactttCTTGGTTTCTATTTGCCAATCAGTGTTGATATCACATCCAGATATTCCCTGACAGAAACCAGACAGACAGCTTCTATTGCCTACCTGGGGTGTATTGTTCCAAACCCTGAGGTGAACTTGTGTAAAAGACTTAAAAGGACTAATCATACTGGACTGTGTATTGGGACTATTTCTTTCTTGTTCTCTTTGTGTGATATTGCTGCTATTTGGACTTGGTTATTTGGGGTTGGGGTTCTGGGCTTAGTTTTAGATAGGGTttttagtatagtttatttttctagtttttagcttttgtattgtttttagtaGTTTTATTGCCCAGActattaaaggcagttttaatcCTTACTTTGTATTTACTCCGGGATTTGCAGACTTCGTGCCCTGCTAGTTGCCCCTTGCTGTGATTGTGTACCATAATATTTTACTGTTTagaataaaccatttattttactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120111 lncRNA upstream 6230 5036038 ~ 5036271 (+) True G96326
TU119969 lncRNA upstream 372326 4669472 ~ 4670175 (+) True G96205
TU119968 lncRNA upstream 373111 4668893 ~ 4669390 (+) True G96204
TU119967 lncRNA upstream 373717 4668322 ~ 4668784 (+) True G96203
TU119928 lncRNA upstream 375652 4583697 ~ 4666849 (+) False AMCG00015197
TU120129 lncRNA downstream 28845 5076033 ~ 5077903 (+) False AMCG00015212
TU120152 lncRNA downstream 53900 5101088 ~ 5104581 (+) False AMCG00015215
TU120178 lncRNA downstream 146784 5193972 ~ 5194179 (+) True G96384
TU120221 lncRNA downstream 385417 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA downstream 410645 5457833 ~ 5459048 (+) True G96424
AMCG00015207 mRNA upstream 84632 4952437 ~ 4957869 (+) True AMCG00015207
AMCG00015205 mRNA upstream 180685 4846954 ~ 4861816 (+) True AMCG00015205
AMCG00015204 mRNA upstream 204131 4806896 ~ 4838370 (+) True AMCG00015204
AMCG00015206 mRNA upstream 236116 4804650 ~ 4806385 (+) True AMCG00015206
AMCG00015201 mRNA upstream 260071 4768539 ~ 4782430 (+) True AMCG00015201
AMCG00015218 mRNA downstream 17132 5064320 ~ 5065243 (+) True AMCG00015218
AMCG00015212 mRNA downstream 20859 5068047 ~ 5077892 (+) True AMCG00015212
AMCG00015215 mRNA downstream 37386 5084574 ~ 5119401 (+) True AMCG00015215
AMCG00015214 mRNA downstream 82153 5129341 ~ 5136836 (+) True AMCG00015214
AMCG00015221 mRNA downstream 272370 5319558 ~ 5351935 (+) True AMCG00015221
TU120099 other upstream 20449 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 162605 4876121 ~ 4879896 (+) True G96264
TU119757 other upstream 942361 4089201 ~ 4100140 (+) True G96030
TU119711 other upstream 1070818 3969829 ~ 3971683 (+) False G95992
TU119665 other upstream 1400301 3641940 ~ 3642200 (+) True G95955
TU120210 other downstream 341749 5388937 ~ 5391723 (+) True G96415
TU120220 other downstream 379691 5426879 ~ 5464117 (+) False G96420
TU120218 other downstream 385417 5432605 ~ 5434022 (+) True G96420
TU120766 other downstream 1950445 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1950445 6997633 ~ 7080788 (+) True AMCG00015293

Expression Profile