RNA id: AMCG00015216


Basic Information

Item Value
RNA id AMCG00015216
length 513
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00015216
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5119198 ~ 5125146 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCTGCTGGTAACAGTCATCCTGGAGTGCACGCTGTTCTCCTCAGtgggaCAAACAACTAAGGTGAACATTAAGTCGTGTGCAGAACCCACAGGCTGTGGAGAGCCAATCTCGATCAACTTTGGAGTGCTTGGAAGGACAACTGTCAATTCAGCGTGCTGCAGCACAGACCTGTGCAACACGCAAAATGTCAATGCATACACAGACAACACCCCAAACAGCCACTGGTGCTTCTTTTGTGACACAGAAGACTGCACAAAGACCAAAAAATGTTTGGGGGCTGAAGACCGCTGCATCAAGTCCTCTGTTACTGTTGGTAGCCAAACCATAGTCGTGAAGGGATGTGCCACCAGCAACATCTGCAGCACCCTGCCACCACAGGAGATTCTCCACAGCACCGGCTTGGGATTCAGCTGCTGTGAGGGATACCTGTGCAACAATGCCAAGCACACTGGACAGAGTCTCTTCCTCCTGCTGGCGTCTCTCGCCCCCATCGCCCTCTTCCTCTGA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120114 lncRNA downstream 80707 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 97133 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA downstream 97133 5021260 ~ 5022065 (-) False G96318
TU120096 lncRNA downstream 102589 5016386 ~ 5016609 (-) True G96314
TU120092 lncRNA downstream 104801 4985572 ~ 5014397 (-) True AMCG00015211
TU120169 lncRNA upstream 31641 5156787 ~ 5157140 (-) True G96375
TU120179 lncRNA upstream 68677 5193823 ~ 5194138 (-) True G96385
TU120256 lncRNA upstream 270747 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 272948 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 283218 5408364 ~ 5451534 (-) True G96454
AMCG00015217 mRNA downstream 5678 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015211 mRNA downstream 36011 4986808 ~ 5083187 (-) False AMCG00015211
AMCG00015210 mRNA downstream 142967 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 246478 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 248169 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015220 mRNA upstream 38261 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 72941 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 109986 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015231 mRNA upstream 233413 5358559 ~ 5359929 (-) True AMCG00015231
AMCG00015228 mRNA upstream 254375 5379521 ~ 5388876 (-) True AMCG00015228
TU120133 other downstream 45392 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 113686 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 113686 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 113686 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 142848 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 630508 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 924331 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1252744 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1573711 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1792620 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile