RNA id: AMCG00015217


Basic Information

Item Value
RNA id AMCG00015217
length 2314
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00015217
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5089834 ~ 5113520 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTACTCAGCACCGGACTCGGGAGGCACAACTTTTTACGAACCAGAGACAATGGATTCAGGACCACGGACAGCGGCTTCCCGGTCCGTTCCTGCAGAGTCTAAGTGGTGAGCAGCGCCTGCGCAGCAGGACCAACAGCGCTCCTCCtccactctctcacactcctGTAGAAAGGGAAAAGGGAGAGATTACTCAGTCCAAGAGGAACTTGCATATGACCAGTGACACGTATGATCTAGACCTTTTAGGTCCAGTGGCGTTGGGATCCCTCGGAAGACAGAGGACTGTCGGCCTGCTGAAGATGAACCTagagcagaaggaCAGAACTGAAGCTGCAGCTATGGGTGTTGAAGAGACACTGCGCTTACTGGGGGCGACTCTACTCCTCCTGCCTGGTGTCCTTGGTGGGAACTGGGCTGTGTGGTATAAACCTGGATATATCTGTGCCGTGAGAGGCTCCTCTGTAGTCCTGCCCTGTTCATATGATTATCCTGATACCTATATCAGCTATTTAGGAACATATAGATATGAGGTGCAGACAGTGATGTGGTGTCACAATAATAGGGACTGTCTTGGTACCTCATATGTGTATCACAGTGGATGGGGTTCAATCAGCCCTGAATACCGACACAGAGCAGAGTACCTGGGGGATAAACAGAAGATCTGCACTTTGAAGATAAACGACATAAGAACATCTGACAGTGGGAAATATAGATTCAGATTTGAAACCAGTCATCCTAGAGATAAAGTGACTGGTAGGAATGGAgtgactctctctgtctctgAACTGAAAATTATAATGGTCCCATCAAGAATGAATGGAGCAGTGAGAGAAGGAGACAGTGTGACCCTGACCTGTAGCACAGAGAGCTGCTCTCCAACACAGACAGAGCTCAGCTGGTTTAAAAATGGCCGGcccatctctcacacacagacaccagccAACACACTGCGCTTTAATCCTGTTTCCTATCAAGACTATGGGAACTACTCCTGtgctgtaaaatacaatatcaacAGTTCAATTTCACAGTTCACATTGGATGTTAAATGTCTGTCCAGTGTGGCGCAGGGCCTTCCTCCACTGGCATGGGTGGGATTGGGAGCTGCTGCCCTTACTGTCACTGTTCTTGGTGTGACTGTGATTTGTGTCAAGAGGAGGAAAGCAAAACCAGGCCCAGAGGAAGAGCCACAGGTGGCAGAGGAAAATGTGTACAATAACGTACTGGACCCATTGCCAAGGCAGGAGCAGAAGCACACTATGGTGGATCTGGACAATGAGCTGAGCTACAGCACCATTCACTTCCAGCCCAAGAATCCCCCATCAGAgCCTGTGGACATGAGCCTAGTGAATGACGATGCAACCATTTACAGCGAAGTCATGAGATAAGAACTTGGAAATGGagaggcgtcacaatctggaacaaactccccagcgatgtggtagaagttgaaaatttgggaacatttaaaaatagactggataggatccttggatcacttcattattaatggacaccaaacgagcacgatgggttgaatggattcctctcatttgtaaactttcttatgttcttatgttctttcttatgttgcttgaaaaaaatagaaagtgcATTTTGTGTTGTAGAAATGAGGTGGATTCGACATTTTCGAGCACCTTTGTTGCTGTAACATTATTAAATGAGTTATGATTTTCTAGAAGCAAAGTTATGTATTAGAATGTAAAACCAATCAAAGTCATAAGAAAAATCATGTGACTACCTGCTTTGCCACAAGAACATATGAATGCAAATGTGTGTGAAACCAGTCTGTGGGACGCTGTCAGGGAGACTCTCCTTCTTTCAGGGTGaacatgtgtatttgtattatgtatttgtacttaTAATAGAGGCCAGTCAATAAGTATTAAACTGTCTCATGATTTTAATGTGACAACGTGATTCAATATTGTCACTATAATCATGTAGCCTATTTtgggatattttaattatgttgaaCTGACACTGATTGgacaaattgtatatttatatgtattaattaactgTGTCATTTTACCACCaatcatttaaaacagcaaACTAGTTTCCTCATACTATTAACCATAGTTTAAGTTCCTATGTTGTactgttgattttgtttaaatatatatttttaaatatttgtatatccTAGGATAGGGgttcctggtcctggaggaccccctaccctgctggtttctgaTCCAACCTAGCTctcaattccttaattgaagtaacagtctgcttagatttgacttttttaattgtttaataaaagaCTTGGTTCTTTAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120114 lncRNA downstream 51343 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 67769 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA downstream 67769 5021260 ~ 5022065 (-) False G96318
TU120096 lncRNA downstream 73225 5016386 ~ 5016609 (-) True G96314
TU120092 lncRNA downstream 75437 4985572 ~ 5014397 (-) True AMCG00015211
TU120169 lncRNA upstream 43267 5156787 ~ 5157140 (-) True G96375
TU120179 lncRNA upstream 80303 5193823 ~ 5194138 (-) True G96385
TU120256 lncRNA upstream 282373 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 284574 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 294844 5408364 ~ 5451534 (-) True G96454
AMCG00015211 mRNA downstream 6647 4986808 ~ 5083187 (-) False AMCG00015211
AMCG00015210 mRNA downstream 113603 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 217114 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 218805 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 301897 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015216 mRNA upstream 5678 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 49887 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 84567 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 121612 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015231 mRNA upstream 245039 5358559 ~ 5359929 (-) True AMCG00015231
TU120133 other downstream 16028 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 84322 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 84322 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 84322 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 113484 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 642134 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 935957 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1264370 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1585337 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1804246 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile