RNA id: AMCG00015223


Basic Information

Item Value
RNA id AMCG00015223
length 1602
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00015223
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5394380 ~ 5398379 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGTCAGGAATCAGGGCTGTTGTACAGACAGATTACGGTCTGGAGATTGTGTTTGACTGGACCACGCTCTTCATGGTGACAGTGAGCAGCAGCTACTACGACAACCTCGCGGGCCTTTGTGGAACCTACAACGAAGACAAGAAGGATGACCTGCAGACGCCAGCGGGCAGCCTTGTCGGGAACATGACTGAATGGGCCAAGTCCTGGAGTGTTCCTGACCGTGACCCCTTCTGTTGGCACTATTGCAAGGGCTACTGCCCCACCTGCTCTGATGAAGATACAGCCTTGTACAGGAGCCAGAAATACTGTGGCCTCCTGGAGGACAAGAAGGGGCCCTTCAGTGAGTGCCACAAAGCCGTGGCACCCCAAATCATCACCGACAACTGCTTGTATGACGTGTGTCTCAACAAAGGCAGGCAGGAGGTGTACTGCCAGGCCTTGGCCAACTATGTGGCCACTTGCCGGGAAGCTGGAAGTTCCGTGTCACCTCAGTGGAGAGAGCTATCTGGATGTCCACTGAACTGTCCAGAGAACAGCCATTACAAATTCTGTGCAAACCCCTGCCCAGCGACGTGCTCCAATCCTACAGGCAGACACTGTGAGTTGCCCTGCACAGAGGGCTGTGAGTGTGAGGAAGGTTTTGTCTACAGTGGGAACAAATGTGTCTCCAGGAAAACAGGCTGTGGCTGCAACTACAAGGATCACTACTACATGCCTATGGAGACCTTCTGGACGGACAGCAACTGTCAGGAGCTGTGTACCTGTGAGGAATCCACACAGTGGGTGAGCTGCCAGATGAGGGGATGCAAAGATGGTGAGAAATGCATGGTTGTTGATGGCATCCAAGACTGTTATCCAATCAGTTACAAGACCTGTAGCGCCATGGGGGACCCTCACTTCCTCAGCTTTGATGGCCTGCAGTTTGACTTCCAGGGCAGCTGTGTCTACAGGCTGGTTGGTGTCTGCTCCAAGGATCCCAGCCTCCAGACCTTCGATGTCTCCCTGGAGAACAACAACCGTGGCAGCCCACGATGTGCGGTGAGGAACGGGGCCCTAGGCTGCTACCCCACTCACGTCACCTGCATCCTCACTAAGGGTTCTGTAGTTGAGTCCTTTGACGGAATGGTCACCAATCTCAGGACTGGGGGTCACTTTGATGTGGTTGTCCACCCTGCTGGAAAGCAAGCTGGGGACAGCAGCTTCAGAGTGGTGGCCGGGATCCAAGCATGTGGCCAGGACAAGTCAACCCTGGGTTTGGTGTTTGCCTTCTTCGCAGAAACTCTGGTCACTGTGTCGGCGAAGCAAAAGGTCTGGgTGAATGGCCAGCCTGTGTCTCTGCCCTGGAAGGCAACCAATGGGCTGGCAGTGTCGGTGGTAGAGGGGGCAGTGGTGATGGAGAAGGATGGGAAGGAGGTGCATCTGAGCTCCATGGGCGACCTCTCTGTGACTGTGCCCAACCTCCTGATGGGCGGTCTGAAGGGTCTGTGTGGCACCTACAACAATGAGGCCAAAGACGACCTGAGGACCAAGGAGAACTTCCTGACAGCTGCCACTGCAGAGTTCATCAAATCCTGGATTTCCGAGGACTTCCTACCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120178 lncRNA upstream 200201 5193972 ~ 5194179 (+) True G96384
TU120152 lncRNA upstream 289799 5101088 ~ 5104581 (+) False AMCG00015215
TU120129 lncRNA upstream 316477 5076033 ~ 5077903 (+) False AMCG00015212
TU120111 lncRNA upstream 358109 5036038 ~ 5036271 (+) True G96326
TU119969 lncRNA upstream 724205 4669472 ~ 4670175 (+) True G96205
TU120221 lncRNA downstream 34226 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA downstream 59454 5457833 ~ 5459048 (+) True G96424
TU120329 lncRNA downstream 353789 5752168 ~ 5753255 (+) True G96512
TU120332 lncRNA downstream 356704 5755083 ~ 5755350 (+) True G96513
TU120367 lncRNA downstream 466665 5865044 ~ 5919123 (+) True G96543
AMCG00015221 mRNA upstream 42445 5319558 ~ 5351935 (+) True AMCG00015221
AMCG00015214 mRNA upstream 257544 5129341 ~ 5136836 (+) True AMCG00015214
AMCG00015215 mRNA upstream 274979 5084574 ~ 5119401 (+) True AMCG00015215
AMCG00015212 mRNA upstream 316488 5068047 ~ 5077892 (+) True AMCG00015212
AMCG00015218 mRNA upstream 329137 5064320 ~ 5065243 (+) True AMCG00015218
AMCG00015226 mRNA downstream 28525 5426904 ~ 5434516 (+) True AMCG00015226
AMCG00015222 mRNA downstream 47605 5445984 ~ 5446945 (+) True AMCG00015222
AMCG00015224 mRNA downstream 64373 5462752 ~ 5470874 (+) True AMCG00015224
AMCG00015225 mRNA downstream 73203 5471582 ~ 5476576 (+) True AMCG00015225
AMCG00015237 mRNA downstream 104086 5502465 ~ 5509697 (+) True AMCG00015237
TU120210 other upstream 2657 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 372328 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 514484 4876121 ~ 4879896 (+) True G96264
TU119757 other upstream 1294240 4089201 ~ 4100140 (+) True G96030
TU119711 other upstream 1422697 3969829 ~ 3971683 (+) False G95992
TU120220 other downstream 28500 5426879 ~ 5464117 (+) False G96420
TU120218 other downstream 34226 5432605 ~ 5434022 (+) True G96420
TU120766 other downstream 1599254 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1599254 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 2016990 7415369 ~ 7415762 (+) True G97006

Expression Profile