RNA id: AMCG00015226


Basic Information

Item Value
RNA id AMCG00015226
length 2049
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00015226
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5426904 ~ 5434516 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCAATGGTCAAAAGGCCAATAATCCCACACAGTTTGGCAACAGCTACAAAGTGGGCGATGCCCTCGGCTGCTCCTCTGAGTGCAAAGACTGTGCCCAGACACCTCCTACCCCCGCCCCTGGGGAGAAACCTCCACCCTATGTGGCTGACTGTGATTCAGGCATTGTGGCCTGTCAGGTTGCTTCCTGTGGTCCCCAGGAGATGTGCAGTGTTTTAGATGGCGTCCAACGTTGCCACCCCAAAGCCTACAGCACATGCAGTGTGTCGGGCCACTCGCATCACCTCACCTTCGATAAACTCAGTTATGACTTCCAGGGAGCCTGCAGCTACACGCTGGTAAATGGTATTTTGACTTCCCTTCCATACTACATGAACAATAGCCAGGGCCAGGCATACAGAAGTGGCAGGTTTGGAGTATTTGAGACCCACTTTGGTCTCCAGCTCTATGTGGCTGACTGTGATCCCAAAGGGCCCCTGGGCGACTGCCTGGGCAAGGTAGACTATGATCGCTTCCATGGCAGCTGCATGTTCGACATCCAGCTGAACAAGGGCCTACAGAAGGCAGCTTGTGATGCCATCGCCGCCTATGTGGAGCAATCTCTTTCCTGCCCGAAGAACAGCGAGTACAGCACTTGTGCTCCCGGGTGCCCTGCCACATGTTACAGCATGAGTGCCCCCACCGGTTGCAAAGCTGCCTGTAGAGAGGGCTGCCAGTGCATGCCAGGCTTCCTGCTGAGCGACGAAGAGTGTGTGCCCATACAGGAATGTGGTTGCAAGCATGAGAACCGCTACTACAGGTCAGATCAGATCTTCTACACAGACGGAGACTGTCAGCTTCGCTGTAGTTGCCAGTCAGGCATTGTGGCTTGTCAGGTTGCTTCCTGTGGTCCCCAGGAGATGTGCAGGGATTTAGATGGCGTCCAAGGTTGCCACCCCAAAGCCTACAGCACATGCAGTGGCCTGGTGGGCAGCGCCAATGAGTTTGGGATATCCTGGAGAATGGAGGGTGGAAAGGAGCTGTGTGGTGATTTCTGTCTGCAGGGAGGCTGCCCCAAACTGGGAGATAAGGAGAGAGAAGAGCTGACAAAATCTGACAAGTGCGGCCTGATCTCAGCTCCCAATGGACCACTGGCCGCTTGTCACCCAGTGCTTCCCCCAGCAGGCTTCCTGGAAAATTGCATTGCCAACAGCTTCACAGTGGGAGGCAAAACAGAAGCCGTATGTCTGGGGATCCAGGCTTACGTTACTGTCTGCCAGGAGGCTGGGGTGACCTTGAAAGACTGGAGGAGTCGCAGCTTCTGTCCTTTCTCATGCCCTGCCAACAGCCACTACAGTCTTTGTGCCGACACATGTCACAACAACTGCATGGGGATAACCAACCCGCAGCTCTGCTCGAAGGACTGCTCAGAGGGATGTGAGTGTGACACGGGCTTTGTGGCAGATGGGGATAAGTGTGTCGAGATACAGGACTGTGGCTGTGAGGTGGATGGGATGTACTTGAAGAGTGGAGAGATCATCTACATTAACAAGTGCACCCAGAAATGCAGCTGTAGCTCCAGGCACAACTCTATATGTGAGGAGACCTCCTGCCCAGCCAACACCCAGTGTGCGGTGAGGAATGGGGCCCTAGGCTGCTGCCCCACTGATGTCACCTGCATCCTGATGGTCACCAGTCTCAGGATTGGGGGTCACTTTGATGTGGTTGTCCACCATGCTGGAAAGCAAGCTGGGAACAGCAGCTTCAGAGTGGTGGCCGGGATCCAAGAATGTGGCCAGGACAAGTCAAGCCTGGGTGTGGTGTTTGCCTTCTTCACAGAAACTCTGGTCACTGTGTCGGCGAAGCAAAAGGTCTGGGTAAGAGTTAATCAAATCCTGGATTTCCAAGGACTTCCTACCTCAGTGGTGAGGCCCCAGTTAATCCAACAATGGTTAATTTTAAGCCAGTGTCTCCCCTCACTGATCCTGGAGAAGCTCCCAGTGTCTGCTGGCTGGCTGGCGTTCATTCCAGCTCCAGTTATTGCTATTGTTGTTGATGTCACCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120178 lncRNA upstream 232725 5193972 ~ 5194179 (+) True G96384
TU120152 lncRNA upstream 322323 5101088 ~ 5104581 (+) False AMCG00015215
TU120129 lncRNA upstream 349001 5076033 ~ 5077903 (+) False AMCG00015212
TU120111 lncRNA upstream 390633 5036038 ~ 5036271 (+) True G96326
TU119969 lncRNA upstream 756729 4669472 ~ 4670175 (+) True G96205
TU120226 lncRNA downstream 23317 5457833 ~ 5459048 (+) True G96424
TU120329 lncRNA downstream 317652 5752168 ~ 5753255 (+) True G96512
TU120332 lncRNA downstream 320567 5755083 ~ 5755350 (+) True G96513
TU120367 lncRNA downstream 430528 5865044 ~ 5919123 (+) True G96543
TU120401 lncRNA downstream 590829 6025345 ~ 6067602 (+) True G96568
AMCG00015223 mRNA upstream 28525 5394380 ~ 5398379 (+) True AMCG00015223
AMCG00015221 mRNA upstream 74969 5319558 ~ 5351935 (+) True AMCG00015221
AMCG00015214 mRNA upstream 290068 5129341 ~ 5136836 (+) True AMCG00015214
AMCG00015215 mRNA upstream 307503 5084574 ~ 5119401 (+) True AMCG00015215
AMCG00015212 mRNA upstream 349012 5068047 ~ 5077892 (+) True AMCG00015212
AMCG00015222 mRNA downstream 11468 5445984 ~ 5446945 (+) True AMCG00015222
AMCG00015224 mRNA downstream 28236 5462752 ~ 5470874 (+) True AMCG00015224
AMCG00015225 mRNA downstream 37066 5471582 ~ 5476576 (+) True AMCG00015225
AMCG00015237 mRNA downstream 67949 5502465 ~ 5509697 (+) True AMCG00015237
AMCG00015241 mRNA downstream 114679 5549195 ~ 5559773 (+) True AMCG00015241
TU120210 other upstream 35181 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 404852 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 547008 4876121 ~ 4879896 (+) True G96264
TU119757 other upstream 1326764 4089201 ~ 4100140 (+) True G96030
TU119711 other upstream 1455221 3969829 ~ 3971683 (+) False G95992
TU120766 other downstream 1563117 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1563117 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1980853 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 2516294 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2639665 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile