RNA id: AMCG00015228


Basic Information

Item Value
RNA id AMCG00015228
length 4056
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00015228
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5379521 ~ 5388876 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGGTAAGACAGTGACCATCAGCCTAGCCCCTTATGAAACCTACCAGCTGAAGAGCCGCTGTACATTCTCAGGAACCCGTGTCAGAGCCACAAGCCCTGTGGCTGTCCTGGCAGGGCACCAGTGCTCTCTTCAGTCCAAGTACTGCAACCACATCTATGAGCAGCTGGTCCCACTGCAGAGTGGCGACCGAAGACAATACCATGTAGGGGATGTGTGGGACGTTTGCATGGGGGATGCCACCCCGCTGGCCATTGACAGCAACAAGAAGTTGATGGTGATGTACTACAGCAACGGGGACCAGAACGACCCCTTCCTGACCAACGTCATCCCCACTGAGGGGTTCTCCAACAAGTGGTTTGTGGACACTCAGCAGTCGTTCACGAGCAGCGCTGTCCTCATCTCCGAGGCTGATGGTGTCCGGAGCATCCTGCTGAACAACAGGAAGCTTTGCAGTCGAATCAGGTGGAAAAATATAGGAGTTGGATCCAAATACGTGTGGACCACAATTGACCTAGGGTCAGATCAAAATCACTTTGCGCTCACCAGTGACTCCATGCTGGGGGTATATGTCCACGGGTTCAAATCTTACGATGCCTATGGTACCACTGGAGTGTGCTATTCAGTGAgtgtggaggaggggaggggggcattAGCAAAGATAGATGGCCAAACTAGTGGCTTTGGCAGAGCAAATAGGAAGGCTGAGTTTGGAAATCTGACAGTTTTCAGAGTGAACAAATCAATGGCAACCaagatttacatttataatatgatGCAAGGGACTGTTTTTTCTCACCATTTCCAGGTTAACAGCATCAGCACACACCTCCCGGTCACCTTGAGCGATGGAAAGCTGCGAGTGGTGCGCAGCGGGGGGTTTGCCTTGCTGCAGACAGACTTTGACCTGCAGGTTATGTACGACTGGAACATGGCACTCTTCATCATGGCACCAAGCAGCTACTTCCGCTCACTCGGTGGTTTATGTGGCAACTACAATGGCAACCGAGAGGATGACTTCTCCACCCCCAAAGGGGCCCTGGCCTCCTCAGTGCTGGACTTTGCCAGCAGCTGGAAAGCAGAGGACAAGGATGTCTTCTGCCACCATGACTGCAAGGGCCAGTGCCCCAGCTGCTCCATGGTCTTACAAGAAAAGTACCGTGGGGAGGCGTTCTGTGGTCTTATGGCCAAGACGGACGGCCCCTTCGCTGGCTGCCACCAGATTCTAGACCCCGGCCTGTTCGTGGACAACTGTGTGTATGACGTATGCATCAACAAGGGCTACAAAAAGTTCTTCTGTGAAGCTATTGAGAGCTATGCAGGTTCCTGCCAGAGGGAAGGAGCCAAAGTGGCCAACAACTGGCGAGTGCTGGCATCCTGCCCACTGTACTGCCCCGAGTACAGCCACTACGAGAATTGCGGCAATGCCTGCCCGGCTTCCTGTAGTGACATAGATGCCCCTTCCAAGTGTAAAATGCCCTGTGCGGAGACATGCCAGTGTAACCCCGACTATGTGCTGAGTGGGACTAAGTGTGTGCCCAAGGAGAGCTGTGGTTGCACCCTTGAGGGCCAGTACTATATGTCCGGGCAGGAGTTCTGGGCAGATGACAAATGCAACAAGAAATGCACATGCCAGGCCAAAACCGGTAAAGTGGAGTGTGTCAGCATGACATGCAAGAACTCTGAAGTGTGTGACCTGCGAAAGGGGATCAGGGGTTGTTACCCCGCCTCCTACGGCACCTGTGTTGCCACAGGGGACCCACACTACCGCACTTTTGATGGCAAGGCCTTCGACTTCCAGGGAACTTGCACCTACCAGATGTCCAAATTGTGCAACCCCACCCCGGGCCTGGTACCCTACGAAGTGCACGTACAGAACGAGAACCGAGGCCGGAACAAGGCTGTCTCCTTCACCAAGATGGTCAAGATATCCATCTATGGCCATGAGATCATCATGAGCAAGGACAACAGTGGCAAAGTTCTGttcaacaacCTGTTTGTCAGCCTGCCCTTCTACTTTGAGGATAACAAGGTGTCCATCTACCGCAGTGGATTACAGGGGGTTCTGAAAACAGACTTCGGCCTGACAGTGAGTTTCAACTGGGTGAGCTACGTGTCTATCTCCCTGCCCAGCACGTACTCTGGCTCCGTCTGTGGGCTCTGTGGCAACTGGAACGGTaaccaaaatgatgacatgCTCGCCCCAGACAAGTCCTTGAGCAGCACTCCTGCCATCTTTGGGGAAAGCTGGAAAGTGAAAGATGTGCCGGGCTGCTCCAGTGACTGCAAAGGCACTTGTCCCATCTGTGACCTCAAGCTAAGGGGCCAGTATGAGGGGAAAGCATTGTGTGGGATAATCAGCAACCCTGACGGTCCCTTCAAGGGCTGTCACGGCAAAGTTGACCCTAAGCTCCACTTTGACAACTGCCTGTTCGACTTGTGTCTGTACCGTGGCCACGTCTCGGCACTCTGTGCAGCCCTCACTGCCTACATGGCGGTGTGCCATGACGCCAGGGCTGAGGTCGCTATTTGGAGGAGTGACACATTCTGCCCTGCCTCCTGCAAGCAGAACAGCCACTATGAAGTGAATGCAACTGGCTGCCCTGTGACCTGCCGTGACCTGTCAGAGGCTCAGAGCTGTGACAGCACCCTCTCCAAGGAGGGCTGCGTGTGCAACGATGGATTTGTGCTGAGTGACAGCAACTGTGTGCCTGTGGCAGAGTGCGGCTGCGTCTGGGGTAGCCAGTACTATAAGACAGATGAGGTCTTCTTCCCCATGGGCCTGTGCTTGCAGCGCTGTGTGTGCCAAGAAGGTGGGAAGGTGGAGTGCGATGATAGCTTCAGCTGCGGCCCCAACGAGAAATGCCAGCTGAAAGACGGGATTCAAGGCTGCCACCCTATGGGCACAGGTTCCTGCTGGATCTCTGGAAACAGCCGCTATCGCTCGTTCGATGGGCGCAGCTTCAGTCTGCGTGGAAACTGCACGTACATGGTGGCCAGTGTGACTGAAGGGAACAACAAACTCATACCTTTCAAAATAATGGTGAACCAGGAGACCGAACTGGGCATCACTGTGACTAGGAGTTTTATGCTGGAGGTCTATGGGTATAGACTGGCCATGCTCCCTGGATATGTTTGGCAGATCAGGGTGGACGGCATCAACACCAACCTACCTGCAATGCTGGAAGATGGGAAAGTGTCAGTCTACCAGAGCGGGATCCACATCATTCTGGAGACGGACTTTGGGCTAAGGGTGAGTTACGACAGCAGCTCCAATACCTTTGTCAGCATCCCCTCCACCTACAAGGGCATGCTGGGTGGCCTCTGCGGCAACTACAATGACAACCAAGGAGATGACTTCGCCCTGCCTGATGGCAAGCAGACTGCTGACGTTGACACTTTCGCAGCTGGCTGGGGGGTGTTGGTCAGCTCGGTGATGTGCCAGACGGGCTGTGGCTCCCAGTGCCCGGCCTCCAACCAGCAGAAAAAGCCTGATGCAGAGAGTGATGTGGTCTGCGGCAAGCTGATATCCAAGAGTGGGCCTTTCTCTGGGTGTCACGCCACTGTGCTGCCCCGTGAATATTTCGAGGAGTGCGTGCAGGAGATGATCACAGAAGGTGGCAATGAAGAGGTCCTGTGCAGTCACCTCCAGCATTATGTGGCCGCCTGCCAAGCTGCAGGGGCCACCGTCAGCAGCTGGAGGACAGAGCAGTTGTGTCCTGTGATGTGCCCCATCAACAGCCACTATGAACTGTGTGCAGACACCTGCACGTCCACCTGTGCTTCTCTCAGCTTGTCCATCAAGTGCCGGAATTGCCAGGAAGGGTGCCAGTGCAATGAAGGCTTTGTGTCCAATGGAGATGCCTGCGTTCCCCTGGAGAGTTGTGGCTGCACGGTGAACGGCATATACTATAAGTCCGGGGAAAATGTGGTTCAGAATGACTGCAGCCAGGCTTGTAGCTGTAAGGCCGGAGTCTTCAGCTGCTCACCCAATGCATGCAGCACTGATGAGATCTGTGAAATCAGAGATGGGGCCATGGGTTGTTACAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120179 lncRNA downstream 185383 5193823 ~ 5194138 (-) True G96385
TU120169 lncRNA downstream 222381 5156787 ~ 5157140 (-) True G96375
TU120114 lncRNA downstream 341030 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 357456 5021260 ~ 5022065 (-) True G96318
TU120256 lncRNA upstream 7017 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 9218 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 19488 5408364 ~ 5451534 (-) True G96454
TU120266 lncRNA upstream 38003 5426879 ~ 5463856 (-) True G96458
TU120268 lncRNA upstream 38860 5427736 ~ 5464667 (-) True G96459
AMCG00015231 mRNA downstream 19592 5358559 ~ 5359929 (-) True AMCG00015231
AMCG00015227 mRNA downstream 138486 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015219 mRNA downstream 166321 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015220 mRNA downstream 212816 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015216 mRNA downstream 254375 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015232 mRNA upstream 21 5388897 ~ 5391016 (-) True AMCG00015232
AMCG00015229 mRNA upstream 2142 5391018 ~ 5391341 (-) True AMCG00015229
AMCG00015230 mRNA upstream 5510 5394386 ~ 5410470 (-) True AMCG00015230
AMCG00015233 mRNA upstream 120635 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015238 mRNA upstream 148469 5537345 ~ 5537795 (-) True AMCG00015238
TU120133 other downstream 305715 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 374009 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 374009 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 374009 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 403171 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 366778 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 660601 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 989014 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1309981 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1528890 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile