RNA id: AMCG00015229


Basic Information

Item Value
RNA id AMCG00015229
length 324
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00015229
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5391018 ~ 5391341 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAATTGAAGGGGTCGAGAGGATGCCTGGTAAGACAGTGACCATCAGCCTAACCCCTTATGAAACCTACCAGCTGAAGAGCCGCTGTTCTTTCTCAGGAACCCGTGTCAGAGCCACAAGCCCTGTGGCTGTCCTGGCAGGGCACCAGTGCTCTCTTCAGTCCAAGTACTGCAACCACATCTATGAGCAGCTGGTCCCACTGCAGAGGTTTTCCACTCAGTTCCTGGTGCCGGCCATGAACCGATCGCCATCCAAGGACCTGGTGCACGTAATGGCGACCGAAGACAATACCATGGTAAAGATCACTGCTGATAGCAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120179 lncRNA downstream 196880 5193823 ~ 5194138 (-) True G96385
TU120169 lncRNA downstream 233878 5156787 ~ 5157140 (-) True G96375
TU120114 lncRNA downstream 352527 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 368953 5021260 ~ 5022065 (-) True G96318
TU120256 lncRNA upstream 4552 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 6753 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 17023 5408364 ~ 5451534 (-) True G96454
TU120266 lncRNA upstream 35538 5426879 ~ 5463856 (-) True G96458
TU120268 lncRNA upstream 36395 5427736 ~ 5464667 (-) True G96459
AMCG00015232 mRNA downstream 2 5388897 ~ 5391016 (-) True AMCG00015232
AMCG00015228 mRNA downstream 2142 5379521 ~ 5388876 (-) True AMCG00015228
AMCG00015231 mRNA downstream 31089 5358559 ~ 5359929 (-) True AMCG00015231
AMCG00015227 mRNA downstream 149983 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015219 mRNA downstream 177818 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015230 mRNA upstream 3045 5394386 ~ 5410470 (-) True AMCG00015230
AMCG00015233 mRNA upstream 118170 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015238 mRNA upstream 146004 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015239 mRNA upstream 146462 5537803 ~ 5540056 (-) True AMCG00015239
AMCG00015240 mRNA upstream 149323 5540664 ~ 5541483 (-) True AMCG00015240
TU120133 other downstream 317212 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 385506 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 385506 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 385506 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 414668 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 364313 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 658136 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 986549 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1307516 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1526425 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile