RNA id: AMCG00015230


Basic Information

Item Value
RNA id AMCG00015230
length 828
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00015230
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5394386 ~ 5463028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACACATTGTGGATATCACAGAAACAAGTGGCCTGTGTGTCAGCCAGATTAGGCAACTGCAAATGCCGCTTGATCCACAACACCCTGAAAAACACGAACAGAATTCTCAGTGCTGCAGGTTATGATGTTGAATCCATTGTCCTAAAAATCTACAGCGAATTCTCATGCTCAGCCAAAAAAGCAGAATCTCTGAAAGAGTTTTGCGAGTTCACTTCAATACAGTACAAAGAGATACTGAGGCATGTACCAACCCATTGGTTATCTCTATTGCCTGCAGTTCAGCAGATCTTGGAGCGTTGGCCTGCCCTGAAGGTGGACAACCACATCAAAGTGACCCCCAGTCCTGAGATTGGTGACCATTCCGTCAAAGGACTCAACTACAGAACCCTTAGTGAGGATGCAGGTGACGGAGACATCGAAGGTCTGGAGGCTGGGATCCTTGGAGCAGACACCAACCAGCCTGTAGACACAGCTGCCCTGGAAGTCAAACTGCAGGCCATCAAAGCTGAGGAAGAGGCCACAGTATTTCTGGCTCCTGTACAAGGCTGTATCTTCATCAGAGCAGGTGGGGCAGTAGCCCTTGCAATAGTGCCAACAGAAGGGGTCACGGTCAGGAACACTCCAGGACTTGGCCCATTCAGTCATGTTCCCGACAAGGCTGCCCGCTGGCGTCTGCAGGTCATCCTTCTTGTCTTCGTTGTAGGTTCCACAAAGGCCCGCGAGGTTGTCGTAGTAGCTGCTGCTCACTGTCACCATGAAGAGCGTGGTCCAGTCAAACACAATCTCCAGACCGTAATCTGTCTGTACAACAGCCCTGATTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120179 lncRNA downstream 200248 5193823 ~ 5194138 (-) True G96385
TU120169 lncRNA downstream 237246 5156787 ~ 5157140 (-) True G96375
TU120114 lncRNA downstream 355895 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 372321 5021260 ~ 5022065 (-) True G96318
TU120266 lncRNA upstream 16409 5426879 ~ 5463856 (-) True G96458
TU120268 lncRNA upstream 17266 5427736 ~ 5464667 (-) True G96459
TU120271 lncRNA upstream 22135 5432605 ~ 5465324 (-) True G96462
TU120290 lncRNA upstream 146781 5557251 ~ 5557505 (-) True G96479
TU120352 lncRNA upstream 375927 5786397 ~ 5788847 (-) True G96531
AMCG00015229 mRNA downstream 3045 5391018 ~ 5391341 (-) True AMCG00015229
AMCG00015232 mRNA downstream 3370 5388897 ~ 5391016 (-) True AMCG00015232
AMCG00015228 mRNA downstream 5510 5379521 ~ 5388876 (-) True AMCG00015228
AMCG00015231 mRNA downstream 34457 5358559 ~ 5359929 (-) True AMCG00015231
AMCG00015227 mRNA downstream 153351 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015233 mRNA upstream 99041 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015238 mRNA upstream 126875 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015239 mRNA upstream 127333 5537803 ~ 5540056 (-) True AMCG00015239
AMCG00015240 mRNA upstream 130194 5540664 ~ 5541483 (-) True AMCG00015240
AMCG00015243 mRNA upstream 281188 5691658 ~ 5694064 (-) True AMCG00015243
TU120133 other downstream 320580 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 388874 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 388874 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 388874 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 418036 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 345184 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 639007 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 967420 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1288387 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1507296 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile