RNA id: TU120256


Basic Information

Item Value
RNA id TU120256
length 603
lncRNA type sense_over
GC content 0.52
exon number 2
gene id AMCG00015230
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5394386 ~ 5463028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACCAGGATCTTCCCTCGGTAATCATTACTGATGGTGATGGAGCTGTCGAAGACCTTGACTGTCACTACCTTGGCAAAGGACACTCGTGGGCTGCCACGGTTGTTGTTCTCCAGGGAGACATCGAAGGTCTGGAGGCTGGGATCCTTGGAGCAGACACCAACCAGCCTGTAGACACAGCTGCCCTGGAAGTCAAACTGCAGGCCATCAAAGCTGAGGAAGTGAGGGTCCCCCATGGCGCTACAGGTCTTGTAACTGATTGGATAACAGTCTTGGATGCCATCAACAACCATGCATTTCTCACCATCTTTGCATCCCCTCATCTGGCAGCTCACCCACTGTGTGGATTCCTCACAGGTACACAGCTCCTGACAGTTGCTGTCCGTCCAGAAGGTCTCCATAGGCATGTAGTAGTGATCCTTGTAGTTGCAGCCACAGCCTGTTTTCCTGGAGACACATTTGTTCCCACTGTAGACAAAACCTTCCTCACACTCACAGCCCTCTGTGCAGGGCAACTCACAGTGTCTGCCTGTAGGATTGGAGCACGTCGCTGGGCAGGGGTTTGCACAGAATTTGTAATGGCTGTTCTCTGGACAGTTCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120179 lncRNA downstream 201755 5193823 ~ 5194138 (-) True G96385
TU120169 lncRNA downstream 238753 5156787 ~ 5157140 (-) True G96375
TU120114 lncRNA downstream 357402 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 373828 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA downstream 373828 5021260 ~ 5022065 (-) False G96318
TU120290 lncRNA upstream 94223 5557251 ~ 5557505 (-) True G96479
TU120352 lncRNA upstream 323369 5786397 ~ 5788847 (-) True G96531
TU120354 lncRNA upstream 329375 5792403 ~ 5792614 (-) True G96532
TU120450 lncRNA upstream 464431 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA upstream 474395 5937423 ~ 5972170 (-) True G96609
AMCG00015229 mRNA downstream 4552 5391018 ~ 5391341 (-) True AMCG00015229
AMCG00015232 mRNA downstream 4877 5388897 ~ 5391016 (-) True AMCG00015232
AMCG00015228 mRNA downstream 7017 5379521 ~ 5388876 (-) True AMCG00015228
AMCG00015231 mRNA downstream 35964 5358559 ~ 5359929 (-) True AMCG00015231
AMCG00015227 mRNA downstream 154858 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015233 mRNA upstream 46483 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015238 mRNA upstream 74317 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015239 mRNA upstream 74775 5537803 ~ 5540056 (-) True AMCG00015239
AMCG00015240 mRNA upstream 77636 5540664 ~ 5541483 (-) True AMCG00015240
AMCG00015243 mRNA upstream 228630 5691658 ~ 5694064 (-) True AMCG00015243
TU120133 other downstream 322087 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 390381 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 390381 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 390381 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 419543 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 292626 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 586449 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 914862 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1235829 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1454738 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile