RNA id: AMCG00015231


Basic Information

Item Value
RNA id AMCG00015231
length 672
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00015231
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5358559 ~ 5359929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCTTGGAGCCGTGACGTATTCCACTCTGAGCATCTGTGCTCAGAAAGGGAGCTCGGTGACCATCCCCTGTCAGTATAACTACTCGGATTTCTCGAGCATCAAAGTCATAACCGCCAAGTGGTTCCTCTCCAATACAGACTGGAACACTGAAAGCTCTGACTACGTGTACCACACTAAAGAGAACTTAATCAACGCCAAGTACCAAAACAGAAGCGAGTACCTGGGGAACGCACACAGGAACTGTACCTTAAAGATTAGAAACATCCAGAGCTCTGACAGCAATACCTACACGTACAGATATGAAACAGACAAAGATTATGAGAGATTCACTGGTACCCCTGGAGTGATGCTCAAAGTTTCAGGTACAAATTTCACTGTTGCTGTGctgatattgttttgtttgcagacCAGCGATTCCCCATTACAGGTTAAGATGACACTGTGGGAGCAAAACAGTGACGGAGGTGACAAAATCAGCCTGACCTGCAGGACAACCAGCTGCACTCCAACACAGACAGAGATCATCTGGTATAAGAATGGCTGGCCCATCTCTAACAGAACATCACACACACTTGACTTCCACCCATTTTCTCATCAAGACTGTGGAAGCTACTCCTGTGCCATGAAAGACACCAATAACAGGACACCAGAGTTCGTCTTTAAAGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120179 lncRNA downstream 164421 5193823 ~ 5194138 (-) True G96385
TU120169 lncRNA downstream 201419 5156787 ~ 5157140 (-) True G96375
TU120114 lncRNA downstream 320068 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 336494 5021260 ~ 5022065 (-) True G96318
TU120256 lncRNA upstream 35964 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 38165 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 48435 5408364 ~ 5451534 (-) True G96454
TU120266 lncRNA upstream 66950 5426879 ~ 5463856 (-) True G96458
TU120268 lncRNA upstream 67807 5427736 ~ 5464667 (-) True G96459
AMCG00015227 mRNA downstream 117524 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015219 mRNA downstream 145359 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015220 mRNA downstream 191854 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015216 mRNA downstream 233413 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015217 mRNA downstream 245039 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015228 mRNA upstream 19592 5379521 ~ 5388876 (-) True AMCG00015228
AMCG00015232 mRNA upstream 28968 5388897 ~ 5391016 (-) True AMCG00015232
AMCG00015229 mRNA upstream 31089 5391018 ~ 5391341 (-) True AMCG00015229
AMCG00015230 mRNA upstream 34457 5394386 ~ 5410470 (-) True AMCG00015230
AMCG00015233 mRNA upstream 149582 5509511 ~ 5514825 (-) True AMCG00015233
TU120133 other downstream 284753 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 353047 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 353047 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 353047 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 382209 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 395725 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 689548 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1017961 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1338928 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1557837 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile