RNA id: AMCG00015232



Basic Information


Item Value
RNA id AMCG00015232
length 624
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00015232
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5388897 ~ 5391016 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGAAGACCGGGGATGTGTGGGACGTTTGCATGGGGGATGCCACCCCGCTGGCCATTGAGAGCAACAAGAAGGTGATGGTGATGTACTACAGCAACGGGGACCAGAACGACCCCTTCCTGACCAACGTCATCCCCACTGAGGGGTTCTCCATCAAGTGGTTTGTGGACACTCAGCAGTCGTTCACGAGCAGCGCTGTCCTTATCTCCAAGATGGTGAGCATCCTGCTTAACAACAGGAAGCTTTGCAGTCGAATCAGGTGGAAAAATATAGGAGTTGGATCCAAATACGTGTGGACCACAATTGACCTAGGGTCAGATCAAAATCACTTGGAGCTCACTAGTGACTCTATGCTGGGGGTATATGTCCACGGGTTAAAATCTTACGATGCCTATGGTACCACTGGAGTGTGCTATTCAGGTGCCAGCGGATCATGCCCTATAGGAACAGACTTCCTCACTAGCTTGTCCGGGGACAGCTGTGTGGTTTTCCCTACCGAAGAGCTGGGCACTGAGTACATCATCTTCACACCCAACACGGGCCTCAGTTCCATGGATAAACTGGCCACCATCATCAATGGCAAGGACCCCAACCAGTGGAGATCTGCCCCAAAGTCAAAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120179 lncRNA downstream 194759 5193823 ~ 5194138 (-) True G96385
TU120169 lncRNA downstream 231757 5156787 ~ 5157140 (-) True G96375
TU120114 lncRNA downstream 350406 5038290 ~ 5038491 (-) True G96329
TU120101 lncRNA downstream 366832 5021260 ~ 5022065 (-) True G96318
TU120256 lncRNA upstream 4877 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 7078 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 17348 5408364 ~ 5451534 (-) True G96454
TU120266 lncRNA upstream 35863 5426879 ~ 5463856 (-) True G96458
TU120268 lncRNA upstream 36720 5427736 ~ 5464667 (-) True G96459
AMCG00015228 mRNA downstream 21 5379521 ~ 5388876 (-) True AMCG00015228
AMCG00015231 mRNA downstream 28968 5358559 ~ 5359929 (-) True AMCG00015231
AMCG00015227 mRNA downstream 147862 5235132 ~ 5241035 (-) True AMCG00015227
AMCG00015219 mRNA downstream 175697 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015220 mRNA downstream 222192 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015229 mRNA upstream 2 5391018 ~ 5391341 (-) True AMCG00015229
AMCG00015230 mRNA upstream 3370 5394386 ~ 5410470 (-) True AMCG00015230
AMCG00015233 mRNA upstream 118495 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015238 mRNA upstream 146329 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015239 mRNA upstream 146787 5537803 ~ 5540056 (-) True AMCG00015239
TU120133 other downstream 315091 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 383385 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 383385 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 383385 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 412547 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 364638 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 658461 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 986874 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1307841 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1526750 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile