RNA id: AMCG00015234



Basic Information


Item Value
RNA id AMCG00015234
length 630
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00015234
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5597046 ~ 5603355 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGCTGGGTGGTGCTCTGGTGGTGACGTATCCAGTGTCACAGATCTGTGCCCTGAGAGGCTCCTCTGTGGTCATACCCTGTACCTACGATTATCCTGCCAATGCCACAGTGACAGGGAGGAGGTGGTCCCAGTTTAAAAATGATAGCCCCCCTGTTACACCACCCTATATTTATAACAGTAAAAACAGTGGTCTCAATACTAATTACAAAGGCAGAGTGCAGTACAATGGACTAAACAAGAACTGCAGCTTGAAAGTGATGGATTTAAGGAACACTGATGGCAACTGGAAATATTTCTTCAGAATAATCATAGACAGACCGGCAAATGCATTCACTGGTGTGCCTGGAGTGCTTCTAAACATTACAGATCTGCCCTTGGGAGTTAAAGTGACGTCCACAGGAAGTGACGAGATTATTCTGGGATACAATGTGACCCTGACCTGCAGCACACAGAGCTGCTCTCCAACACAGACAGAGTTCACCTGGTTTAAGGATGGCCGGCCCACCTACAACACCACATCAAACACATTGCGCTTTAATCCTGTTTCCTATCAAGACTATGGAAACTACTCCTGTGCTTCAAAAGACAATACAAGTATACAGTCTCCTCAGATCACTTTGGATATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120221 lncRNA upstream 131612 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA upstream 137998 5457833 ~ 5459048 (+) True G96424
TU120178 lncRNA upstream 402867 5193972 ~ 5194179 (+) True G96384
TU120152 lncRNA upstream 492465 5101088 ~ 5104581 (+) False AMCG00015215
TU120129 lncRNA upstream 519143 5076033 ~ 5077903 (+) False AMCG00015212
TU120329 lncRNA downstream 148813 5752168 ~ 5753255 (+) True G96512
TU120332 lncRNA downstream 151728 5755083 ~ 5755350 (+) True G96513
TU120367 lncRNA downstream 261689 5865044 ~ 5919123 (+) True G96543
TU120401 lncRNA downstream 421990 6025345 ~ 6067602 (+) True G96568
TU120405 lncRNA downstream 448043 6051398 ~ 6064774 (+) True G96572
AMCG00015236 mRNA upstream 26691 5560078 ~ 5570355 (+) True AMCG00015236
AMCG00015241 mRNA upstream 37273 5549195 ~ 5559773 (+) True AMCG00015241
AMCG00015237 mRNA upstream 87349 5502465 ~ 5509697 (+) True AMCG00015237
AMCG00015225 mRNA upstream 120470 5471582 ~ 5476576 (+) True AMCG00015225
AMCG00015224 mRNA upstream 126172 5462752 ~ 5470874 (+) True AMCG00015224
AMCG00015235 mRNA downstream 77648 5681003 ~ 5682646 (+) True AMCG00015235
AMCG00015242 mRNA downstream 110350 5713705 ~ 5721665 (+) True AMCG00015242
AMCG00015246 mRNA downstream 169502 5772857 ~ 5788371 (+) True AMCG00015246
AMCG00015245 mRNA downstream 195138 5798493 ~ 5810929 (+) True AMCG00015245
AMCG00015252 mRNA downstream 356327 5959682 ~ 5972115 (+) True AMCG00015252
TU120220 other upstream 132929 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 163024 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 205323 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 574994 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 717150 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 1394278 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1394278 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1812014 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 2347455 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2470826 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile