RNA id: AMCG00015235



Basic Information


Item Value
RNA id AMCG00015235
length 678
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00015235
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5681003 ~ 5682646 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGTGTGAGGGGAGCTGTGTTCCTGGGGCTGACTCTGTCAATACTGCCTGGTGTGCTGGGTGGTGCTCTGGTGGTGATGTATCCAGCGTCACAGATCTGTGCCCTGAGAGGCTCCTCTGTGCTCATACCCTGTACCTACAATTATCCTGACAATGCCACAGTGACAGAGAGGAAGTGGTCAAAGGATATAACATCTAACTGGGATGCACCTCCTTATATTTATCAAAGTAATGGGGCATCTCTTGACTCTGACTACACAGGCAGAGTACAGTATACTGAAATAAACAAGAGCTGCCGCTTCATGTTGACgggtataaaaaacaatgacagcgGGAGTTATTacttcagaattaaaataaacatgcaaccCAATGCATACAGTGGTGTGCCTGGAGTGAGTCTCAATGTTGTTGATCAAACATTGATAGTTACAGTGACGTCCACAGGAAGTGATGAGATCTTTCTGGTAGACAATGTGACCCTGACCTGCAGCACAACCAGCTGCTCTCCAAACCAGACAGAGTTCACCTGGTTTAAGGATGGCCGGCCCACCTACAACACCACATCAAACACACTGAGCTTTAATAATGTTTCCTATGGACTCTATGGAAACTACTCCTGTGCTCCAAAAGACAATACAAGTATACAGTCTCCACAGATCACTTTGAATGTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120221 lncRNA upstream 215569 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA upstream 221955 5457833 ~ 5459048 (+) True G96424
TU120178 lncRNA upstream 486824 5193972 ~ 5194179 (+) True G96384
TU120152 lncRNA upstream 576422 5101088 ~ 5104581 (+) False AMCG00015215
TU120129 lncRNA upstream 603100 5076033 ~ 5077903 (+) False AMCG00015212
TU120329 lncRNA downstream 69522 5752168 ~ 5753255 (+) True G96512
TU120332 lncRNA downstream 72437 5755083 ~ 5755350 (+) True G96513
TU120367 lncRNA downstream 182398 5865044 ~ 5919123 (+) True G96543
TU120401 lncRNA downstream 342699 6025345 ~ 6067602 (+) True G96568
TU120405 lncRNA downstream 368752 6051398 ~ 6064774 (+) True G96572
AMCG00015234 mRNA upstream 77648 5597046 ~ 5603355 (+) True AMCG00015234
AMCG00015236 mRNA upstream 110648 5560078 ~ 5570355 (+) True AMCG00015236
AMCG00015241 mRNA upstream 121230 5549195 ~ 5559773 (+) True AMCG00015241
AMCG00015237 mRNA upstream 171306 5502465 ~ 5509697 (+) True AMCG00015237
AMCG00015225 mRNA upstream 204427 5471582 ~ 5476576 (+) True AMCG00015225
AMCG00015242 mRNA downstream 31059 5713705 ~ 5721665 (+) True AMCG00015242
AMCG00015246 mRNA downstream 90211 5772857 ~ 5788371 (+) True AMCG00015246
AMCG00015245 mRNA downstream 115847 5798493 ~ 5810929 (+) True AMCG00015245
AMCG00015252 mRNA downstream 277036 5959682 ~ 5972115 (+) True AMCG00015252
AMCG00015255 mRNA downstream 322661 6005307 ~ 6018242 (+) True AMCG00015255
TU120220 other upstream 216886 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 246981 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 289280 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 658951 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 801107 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 1314987 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1314987 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1732723 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 2268164 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2391535 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile