RNA id: AMCG00015237



Basic Information


Item Value
RNA id AMCG00015237
length 678
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00015237
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5502465 ~ 5509697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gTGCTCAGTGGTGATCTGGTGGTGACGTATCCAGTGTCACAGATCTGTGCCCTGAGGGGCTCCTCTGTGCTCATACCCTGTACCTACGAATATCCTGACAATGCCACAGTGACAGAGAGGAATAGGGGGGAACATCTTGACACTAACTACACAGGCAGAGTGCAGTATACTGAACAAGACAGGAGCTGCAGCTTCAAGTTGACAGGTGTGCTCAGTGGTGATCTGGTGGTGACGTATCCAGTGTCACAGATCTGTGCCCTGAGGGGCTCCTCTGTGCTCATACCCTGTACCTACGAATATCCTGACAATGCCACAGTGACAGAGAGGAATAGAGGGGAACATCTCGACCCTGAATACACAGGCAGAGTGCAGTATACTGAACAAGACAGGAGCTGCAGCTTCAAGTTGACAGATGGTCCCTTGACAGttaaagtgaaaacaacaagACACAACCCTGTCATTCTAGAAGGAGACAATGTGACCCTGacctgcagcacacacagctgCTCTCCAAACCAGACAGAGTTCACCTGGTTTAAGGATGGCCGGCCCACCTACAACACCACATCAAACACACTGAGCTTTAATAATGTTTCCTATGAACACTTTGGAAACTACTCCTGTGCTGCAAAAGACAATACAAGTGTGCAGTCTCCACAGATCACTTTGAAGGTTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120221 lncRNA upstream 37031 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA upstream 43417 5457833 ~ 5459048 (+) True G96424
TU120178 lncRNA upstream 308286 5193972 ~ 5194179 (+) True G96384
TU120152 lncRNA upstream 397884 5101088 ~ 5104581 (+) False AMCG00015215
TU120129 lncRNA upstream 424562 5076033 ~ 5077903 (+) False AMCG00015212
TU120329 lncRNA downstream 242471 5752168 ~ 5753255 (+) True G96512
TU120332 lncRNA downstream 245386 5755083 ~ 5755350 (+) True G96513
TU120367 lncRNA downstream 355347 5865044 ~ 5919123 (+) True G96543
TU120401 lncRNA downstream 515648 6025345 ~ 6067602 (+) True G96568
TU120405 lncRNA downstream 541701 6051398 ~ 6064774 (+) True G96572
AMCG00015225 mRNA upstream 25889 5471582 ~ 5476576 (+) True AMCG00015225
AMCG00015224 mRNA upstream 31591 5462752 ~ 5470874 (+) True AMCG00015224
AMCG00015222 mRNA upstream 55520 5445984 ~ 5446945 (+) True AMCG00015222
AMCG00015226 mRNA upstream 67949 5426904 ~ 5434516 (+) True AMCG00015226
AMCG00015223 mRNA upstream 104086 5394380 ~ 5398379 (+) True AMCG00015223
AMCG00015241 mRNA downstream 39498 5549195 ~ 5559773 (+) True AMCG00015241
AMCG00015236 mRNA downstream 50381 5560078 ~ 5570355 (+) True AMCG00015236
AMCG00015234 mRNA downstream 87349 5597046 ~ 5603355 (+) True AMCG00015234
AMCG00015235 mRNA downstream 171306 5681003 ~ 5682646 (+) True AMCG00015235
AMCG00015242 mRNA downstream 204008 5713705 ~ 5721665 (+) True AMCG00015242
TU120220 other upstream 38348 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 68443 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 110742 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 480413 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 622569 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 1487936 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1487936 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1905672 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 2441113 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2564484 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile