RNA id: AMCG00015239


Basic Information

Item Value
RNA id AMCG00015239
length 546
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00015239
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5537803 ~ 5540056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGATTGTGTTTGACTGGACCACACTCTTCATGCTGACAGTGAGCAGCAGCTACTGCGAAAACCTCGCGGGCCCTTGTGGAACCTACAAAGAAGACAAGAAGGATGACCTGCAGACGCCAGCGGGCAGCCTTGTCAGGAACATGACTGAATGGGCCAAGTCCTGCAGTGACCCCTTCTGTTGGCACTATTACAAGGGCTACTGCCCCACCTGCTCTGATGAAGATACAGCCTTGTACAGGAGCCAGAAATACTGTGGCCACCTGGAGGACAAGAAGGGGCCCTTCAGTGAGTGCCACAAAGCCGTGGCACCCCAAATCATCACCAACAACTGCTTGTATGACGTGTGTCTCAACAAAGGCAGGCAGGAGGTGTACTGCCAGGCCTTGGCCAACTATGTGGCCACTTGCCGGGAACCTGGAAGTTCCATGTCACCTCAGTGGAGAGAGCTATCTGGATGTCACAGCAACTGTCAGGAGCTGTGTACCTGTGAGGAATCCATGCAATGTGTGAGCTGCCAGATGAGGGGATGCAAAGAAGGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120271 lncRNA downstream 72479 5432605 ~ 5465324 (-) True G96462
TU120268 lncRNA downstream 73136 5427736 ~ 5464667 (-) True G96459
TU120266 lncRNA downstream 73947 5426879 ~ 5463856 (-) True G96458
TU120256 lncRNA downstream 74775 5395893 ~ 5463028 (-) False AMCG00015230
TU120261 lncRNA downstream 86269 5408364 ~ 5451534 (-) True G96454
TU120290 lncRNA upstream 17195 5557251 ~ 5557505 (-) True G96479
TU120352 lncRNA upstream 246341 5786397 ~ 5788847 (-) True G96531
TU120354 lncRNA upstream 252347 5792403 ~ 5792614 (-) True G96532
TU120450 lncRNA upstream 387403 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA upstream 397367 5937423 ~ 5972170 (-) True G96609
AMCG00015238 mRNA downstream 8 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015233 mRNA downstream 22978 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015230 mRNA downstream 127333 5394386 ~ 5410470 (-) True AMCG00015230
AMCG00015229 mRNA downstream 146462 5391018 ~ 5391341 (-) True AMCG00015229
AMCG00015232 mRNA downstream 146787 5388897 ~ 5391016 (-) True AMCG00015232
AMCG00015240 mRNA upstream 608 5540664 ~ 5541483 (-) True AMCG00015240
AMCG00015243 mRNA upstream 151602 5691658 ~ 5694064 (-) True AMCG00015243
AMCG00015244 mRNA upstream 213537 5753593 ~ 5757042 (-) True AMCG00015244
AMCG00015249 mRNA upstream 269978 5810034 ~ 5826236 (-) True AMCG00015249
AMCG00015248 mRNA upstream 288692 5828748 ~ 5843272 (-) True AMCG00015248
TU120133 other downstream 463997 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 532291 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 532291 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 532291 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 561453 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 215598 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 509421 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 837834 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1158801 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1377710 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile