RNA id: AMCG00015243


Basic Information

Item Value
RNA id AMCG00015243
length 657
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00015243
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5691658 ~ 5694064 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaaacactgTTGCAGTGCACTAGGAAACTGACTGGATTGATCTCAGACTGTTCTCTCTTCCAGACGCCCCAAAGGACACCTCAGTGTCAGTCAGCCCCTCTGGTGAAATAGTGGAAGGCAGTTCTGTCACCCTGAcctgcagcagcaatgcaaaCCCACCAGAGCAGAACTACACCTGGTTTAAGACCAATGGAGCTGCTGTCTTGGAGAAAGGATCAGGGCAAAGTTTCAACATTACAGAGATCAGCTCTGGAGACAGTGGGCAGTACTACTGTGAAGCACAGAATAAACATGGAGCTCACAACTCTACAGCTGTATCTGTGACTGTAGCAGGTAAACTGAATTTAGCCCTGATTCTTGCAGTGTCAGGGACAGTGCTATTTCTCATTATTGTAGCGGTGGTGGTTGTCATTGCGGTTAATAGGACTGACTGGATACTAACTTTCTTAAAGGGGGTGGCAGAAATCTTCTTTGAGAATACAGCCATTTCGCAGACCCTGGGGGGAGAGAAGGGCCCGAGCGCCGCAGCACCAGATGAGGATCTCAATTATGCTGCCATTCACTTCCAAGCCAAGACACCAGTAGGaaatggaTCCACCAAACCAGAGGAGGATGACCCCTCAGTCATCTATAGTGCAGTGAAAGGTCAATCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120259 lncRNA downstream 132059 5398094 ~ 5559599 (-) True G96452
TU120290 lncRNA downstream 134153 5557251 ~ 5557505 (-) True G96479
TU120271 lncRNA downstream 226334 5432605 ~ 5465324 (-) True G96462
TU120268 lncRNA downstream 226991 5427736 ~ 5464667 (-) True G96459
TU120266 lncRNA downstream 227802 5426879 ~ 5463856 (-) True G96458
TU120352 lncRNA upstream 92333 5786397 ~ 5788847 (-) True G96531
TU120354 lncRNA upstream 98339 5792403 ~ 5792614 (-) True G96532
TU120450 lncRNA upstream 233395 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA upstream 243359 5937423 ~ 5972170 (-) True G96609
TU120469 lncRNA upstream 331304 6025368 ~ 6072079 (-) False AMCG00015257
AMCG00015240 mRNA downstream 150175 5540664 ~ 5541483 (-) True AMCG00015240
AMCG00015239 mRNA downstream 151602 5537803 ~ 5540056 (-) True AMCG00015239
AMCG00015238 mRNA downstream 153863 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015233 mRNA downstream 176833 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015230 mRNA downstream 281188 5394386 ~ 5410470 (-) True AMCG00015230
AMCG00015244 mRNA upstream 59529 5753593 ~ 5757042 (-) True AMCG00015244
AMCG00015249 mRNA upstream 115970 5810034 ~ 5826236 (-) True AMCG00015249
AMCG00015248 mRNA upstream 134684 5828748 ~ 5843272 (-) True AMCG00015248
AMCG00015250 mRNA upstream 151112 5845176 ~ 5849429 (-) True AMCG00015250
AMCG00015247 mRNA upstream 170980 5865044 ~ 5880190 (-) True AMCG00015247
TU120133 other downstream 617852 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 686146 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 686146 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 686146 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 715308 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 61590 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 355413 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 683826 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1004793 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1223702 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile