RNA id: TU120336


Basic Information

Item Value
RNA id TU120336
length 1146
RNA type TUCP
GC content 0.58
exon number 2
gene id AMCG00015244
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5753593 ~ 5757109 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCGGGATTCTGATTGGGTATTCGTGTTTTATTTTCGTAGAGCTGGAAGATGGTTGGCTTGCCACCACGTCAGTCAAGGCGGAAGGCGGAAAGGTTGCTGGTGGAGAGCAGGAAATGCAGAGACAATGTAAACAGTGGCGACCGAACAGCGTGGGCTCTTTTGAACTGAAGGAGGCATCAAGTGAAATAAGACTAGTGCAACTGGAACAGCATGTGGCACCGCTGTGTTGGCCACTCATATATTTACAAACACCACAACGTCTGTCCTGTATGTTAAAAGCTGGGAGGAACACACAGAAGTTGGACTGGCCGGGTGTATTCTGGCCACACTTATAACGGACTGCCGTGACTTAAATGGGGGGGTTGTTTGCAATATACACAGCGCATAATTGCAGCGCATAACGTACATCCGGGACACTACAGTAAGGAATCACAGCAACCCCTCTTCTTGTGAAATCGGCTGTGCAGTcaggggttaaaaaaaagaagcatgggtcctgtgaaaaaaagaaagtccCTCAGTCTTGcggaaaaagtgaaaataatccATTCCCTTACCCGCGGGGAAAACACGCTagaggaggtggagagagagtaCAGCCTCCCGAGGACCAGCGTGTACTCCATACTGCGGAACCGGGCGAACACTCTCCGGCAGGTCGAGCGAGGCTGCGGCCGGGGGGCCAAGCGCGTCCGCAGGGCGGCGTTCGGCGAGGTGGACCGGGCGCTGCTGCAGTGGTACAGGGGGCCGCGATGCGAAAGCGCGCCGCTGACCTCCACGCTTCTGCGGGAGAAAGCCAAGCAGCTCGCCGCCACGTTGGGCTACGAGAAATTTCGTTGCAGTTTTGGTTGGCTTGAGAGCTGGAAGAAAAGGCACGACGTGACACTAAAGCCACCCAGAGGTGACCCCCACCAAGCAGAAGGCCCTGAGCACTGGGTGTTTGAGCTGGGCCCGGCGCAGGAGCCCCAGACTCCCAGAGGCCCCGGCAGCCCTGAGGCCTGTCAGCCAGCGCCCGCTCTCCTGCGTGGGCCTGTGTGCGGAGAGGCCAGCCTGGCCAccaaggaggaggaggaggcggtgCTGCAGTGTGAGCCGAGAGGAGAGCCCCCCTCCCACAGCGCCCCTGCGGCACACTGCCAGGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120259 lncRNA downstream 196055 5398094 ~ 5559599 (-) True G96452
TU120290 lncRNA downstream 198149 5557251 ~ 5557505 (-) True G96479
TU120271 lncRNA downstream 290330 5432605 ~ 5465324 (-) True G96462
TU120268 lncRNA downstream 290987 5427736 ~ 5464667 (-) True G96459
TU120266 lncRNA downstream 291798 5426879 ~ 5463856 (-) True G96458
TU120352 lncRNA upstream 29288 5786397 ~ 5788847 (-) True G96531
TU120354 lncRNA upstream 35294 5792403 ~ 5792614 (-) True G96532
TU120450 lncRNA upstream 170350 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA upstream 180314 5937423 ~ 5972170 (-) True G96609
TU120469 lncRNA upstream 268259 6025368 ~ 6072079 (-) False AMCG00015257
AMCG00015243 mRNA downstream 61590 5691658 ~ 5694064 (-) True AMCG00015243
AMCG00015240 mRNA downstream 214171 5540664 ~ 5541483 (-) True AMCG00015240
AMCG00015239 mRNA downstream 215598 5537803 ~ 5540056 (-) True AMCG00015239
AMCG00015238 mRNA downstream 217859 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015233 mRNA downstream 240829 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015249 mRNA upstream 52925 5810034 ~ 5826236 (-) True AMCG00015249
AMCG00015248 mRNA upstream 71639 5828748 ~ 5843272 (-) True AMCG00015248
AMCG00015250 mRNA upstream 88067 5845176 ~ 5849429 (-) True AMCG00015250
AMCG00015247 mRNA upstream 107935 5865044 ~ 5880190 (-) True AMCG00015247
AMCG00015251 mRNA upstream 143485 5900594 ~ 5913937 (-) True AMCG00015251
TU120133 other downstream 681848 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 750142 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 750142 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 750142 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 779304 4968050 ~ 4976350 (-) True AMCG00015210
TU120487 other upstream 292368 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 620781 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 941748 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1160657 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 2028978 7786087 ~ 7786442 (-) True G97125

Expression Profile