RNA id: AMCG00015249


Basic Information

Item Value
RNA id AMCG00015249
length 933
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00015249
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5810034 ~ 5826236 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAATgcaACAATGGAACATTGCTGGTGATGATGACAGGGATGGGGACATCCCATTCTCTGTCAGTGACGGGCGTCACTCTGCAGGGGCTATCGGGCACCACGGTGACCAATGGCAGGGTGACACCCATGGGGGAGCCAGGGCAGTACCTGGTGTTTGTGTCAGAGGTGCCGGGCGGCCAGTTCTCTGTTTTGGTCAGAGGGCTGCTCAATGGCTCTCAAGTCTACCAACGTCAGTCCCGTACCCTGCTAACACCCTCGGACATCATCGTGAGGACGGATCTTAACATCTTTCTGGAACCCGGACAGGATTACATCATCCCCTTCACTGTGGAGACCAAGGTGTTGGGTGACATTTTCTCCATCAGCGTGCGGGACGACAAGAGTTTCATGATAAAAACCACAGAGAGCATCACTGCGGGGAGTAATGGCACAGCCAGAGGCACCTTCGCGCTGTCAGTTCCCGCCACCGTGGCCTCGGGCACAGACCTCACAATCACAGTGGAGGCCCAGTCCACCTCAACTAGCGACTTCAACTACGCAGTGTTGCGGCTCGCCATTGACAAGAGGGTTGACGACTTCGTGCCCCCAGCCTGTCAGGTGACCCATGTGTCAGAGAACTGCTCCTCCCCCTGCGGCCTGGGGAAGTGGTCCTTGCAGGCCGAGATCCGGGATAATCGCTCAGCAGTGGTGCACGTCTTCACCCACCTGGGCAACGGCACTCTGAACACGATGCAGGAGAGCGGAGGAGCCAGTGGGAACATGACGCTGGTCAGCTACAGTGCCTCCTGCTGCGCGCCTGAGGTGGAGATCCTGGTGGTGGACTCCGTGGGGAATGCCCTGGGCGCTCTGCTGGGACAGGCGGGACACTGTGGGCAGGAGGGAGGAGACCAGCTCCCCATCCTCCTTCTGCACATGTTGCagcacagctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120354 lncRNA downstream 17420 5792403 ~ 5792614 (-) True G96532
TU120352 lncRNA downstream 21187 5786397 ~ 5788847 (-) True G96531
TU120259 lncRNA downstream 250435 5398094 ~ 5559599 (-) True G96452
TU120290 lncRNA downstream 252529 5557251 ~ 5557505 (-) True G96479
TU120271 lncRNA downstream 344710 5432605 ~ 5465324 (-) True G96462
TU120450 lncRNA upstream 101223 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA upstream 111187 5937423 ~ 5972170 (-) True G96609
TU120469 lncRNA upstream 199132 6025368 ~ 6072079 (-) False AMCG00015257
TU120468 lncRNA upstream 238729 6064965 ~ 6072079 (-) False AMCG00015257
TU120496 lncRNA upstream 292385 6118621 ~ 6119653 (-) True G96642
AMCG00015244 mRNA downstream 52992 5753593 ~ 5757042 (-) True AMCG00015244
AMCG00015243 mRNA downstream 115970 5691658 ~ 5694064 (-) True AMCG00015243
AMCG00015240 mRNA downstream 268551 5540664 ~ 5541483 (-) True AMCG00015240
AMCG00015239 mRNA downstream 269978 5537803 ~ 5540056 (-) True AMCG00015239
AMCG00015238 mRNA downstream 272239 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015248 mRNA upstream 2512 5828748 ~ 5843272 (-) True AMCG00015248
AMCG00015250 mRNA upstream 18940 5845176 ~ 5849429 (-) True AMCG00015250
AMCG00015247 mRNA upstream 38808 5865044 ~ 5880190 (-) True AMCG00015247
AMCG00015251 mRNA upstream 74358 5900594 ~ 5913937 (-) True AMCG00015251
AMCG00015258 mRNA upstream 148975 5975211 ~ 6008244 (-) True AMCG00015258
TU120336 other downstream 52925 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 736228 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 804522 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 804522 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 804522 4985572 ~ 5005512 (-) False AMCG00015211
TU120487 other upstream 223241 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 551654 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 872621 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1091530 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1959851 7786087 ~ 7786442 (-) True G97125

Expression Profile