RNA id: AMCG00015254


Basic Information

Item Value
RNA id AMCG00015254
length 3411
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00015254
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6039508 ~ 6046676 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGACGCGCTTCCGTTGACAGGGTGAGCGGCGGCTGCTGGACGTGTCGGCCGAGCGAAAGCACAGTGTCGGCCACGGAAAACGatatcattcattcattcatgcatgcatgcattcattcattcattgtgaAGTAGTGAAACGCAGACGGCATCGTATCGAGCATTACAGTACACGAGCTCGAATGTATTAGTTTATCTTGAGTGCATCTTCTGAAGATATATACTAGTTcattgtgtgcttgtgttttgattaattctAGTTAACGAAAGCGATCggaactttttttaaattagcttaCCTTTCTACGAAGTGTGTACCGCGTATCTTGATGCTGATTTATTGCAATATAACAAACCAGCACTTATTTGTCGTATTAAACGCGGAAGTACAGAACGGGCTGCGCAGTTACTCCATTATTATATCTGAGGCAATAACAGAAAACTCCGTGCGAAAAAATGACTCTTTTCCACTTTGGCAACTGCTTCGCTTTGGCCTATTTTCCGTACTTCATAACATACAAGTGCAGCGGACTATCGGAGTACAATGCTTTCTGGAGGTGTGTCCAGGCAGGAGCCACTTACCTGTTTGTGCAGCTCTGTAAGatGCTGTTCCTGGCCACCTTCTTCCCTACCTGGGAGGGGGGAGCGGGTGTGTACGACTTTGTGGGGGAGTTCATGAAGGCCACAGTGGACTTGGCTGACCTCCTGGGCCTGCACCTGGTGATGTCCAGGAATGCTGGGAAGGGCGAGTACAAGATCATGGTGGCAGCTATGGGCTGGGCCACAGCCGAGCTCGTTATGTCCAGGTGTATTCCTCTCTGGGTTGGTGCTCGAGGGATAGAGTTTGACTGGAAGTACATCCAGATGAGCTTCGACTCCAACATCAGCCTGGTCCACTACATTGCCATGGCCGCAGTAGTCTGGATGTTCACCCGCTACGATCTGCCCAAAAGCTTCCGTCTGCCCGTCACCGTGCTGCTGGGCCTGTGTGTGTACAAGGCCTTTCTGATGGAGCTGTTTGTCCACATGTTCGTGCTGGGCAGCTGGACAGCCCTCCTGGTGAAAGCAGTGCTGACGGGTGccatctctctctgctctctcttcctcttcatcaCCCTGGTGCACAGTAACTGAGaccaccctctctctctaccgTCACTCACACCACACACTGCTGGGGAGTTGGGNNNNNNNNNNgcgcccccctccccccctcccctctccgtTGCAAGCTGACCAATCTCCTGCCAGCCAACCCACCAGAAGTAGTCAGGTCCTCGTGCTCGTGCTCCCCCCCACcataaatacattgcaaattCCTTTCCTGCTCATTTGTTTTACCCTTATTAGCCCTTAGTGATTCCTTATGGCTAGTTCAGTGTCCCTGCAGCAGCAGTCCAGTCCCATTTCCCACAATGCCACTCCAATCACTGCTACAGCCCTTATTGCATTGTGAAGGGAGTGCCTTGTGCTGATCATGTCGCACATCTACACCTCTGCCACTCGAGGGTGCTGTTGCCCCACTTGGCCTGATCCCACCAGGGAGGTTTTCTTCTTGAGTGGATTGTGTTTTAGGTGTGTGATGAGTGTGGGCCTGTGGAGGGGCAGCACTAACAGAATTGGACATTTCCAATGAAACTGCAAGAATgactgttttcctttcttactgaactttttttttttttttttaataatgcctTTTTGTGAGTCAGACCATTGAAAtcttgtattaatatttttgttttgaactgtCAAAGGCCTGTGtcccttttgtttctttctactCAGTGTGACCAGAAAGTATTTTGTGACACTCGGATGGGGATTGATGTACATTTTCTGATGTCTCTTGTCTGGAAGGGAACCATCCAAGTTCTTAAAGTCTGGGGGAAAGGATCATGTTCagatctgtgtgtttttcagtgatGGGATTATGGTGATGATTTGTAGGTCAGAAACACTAggggatttttttccccccatgttGTATGTGGGAGGGTGGGGGTAGGCTATCGTAATAAATGGCTGATAAACTGctcttttattgtttattaatttagttagTAAATCCATGTCTTGCCATTCAACAGTGTGTGGAGCTGCAGAGTTGTACTTCCTGGTCGAACAATAGTTGTCtgaaaatataatctaaaaGTATGGCAAGCCCAACTGGACAAATAGGGATCAGTGCCCCCTACTTCAGCTCTTGTGAGTTGGGGGTTCATTGAGATCTAGTTTAACACGCGCAGTGGTGTTaaaccacccccacccccactgtcCCCCACTAattcagtggttctcaatcctggtcctggagtaccccctacctggtttttgttccaactaagctcttaattgtttaattgtccccttaattgaagtaatttgattacatttgactctctaaattgtgtaactgatataaaattggttccttaataagcaaattatttccttatacagttttatacttaacacccctactgttaaaaataatgaaaaggctctgatttaggaaatgggTTCAATTGAGAACTTGCTAGTCATGCTATCAGGGGGGGATTTGATGGCATTTCGGTCTCGCTAGCGGGGTGTGGGTGGGAATTGGGGCTAATGGACTTTCGGTCGGCCTTGGCGGGACCCCTGGGCACATGGTACTCTAGGACCAGGACTGAGAACCACTGAATTAATCTAAGTATCTGATAATGGTACATTTCTaccttatattttcaaaataaaataaatgtgctgaaCAATCTTCAGCGATCAGCAAATGCAGGCTCTGGCAAATCAAGAATGATATAGGATAGATGAGGTATGATTCACATATACCTAgacacaccttttttttttgtatgtatttaaaatatatgggatatattGAAAGTATATTGTAGTGTCATGGTCCGTAGCGTGCCAGGCAGAGATGGCAGTGGGAATGAATGAGAGGTCAGCAATGCAGAAATGGGGAAGTGGGCTTGATGGCTTAAGACTAGAGTTTAACTGGGCTGGTAGTTCTGGGTAAAGGAAGGCAGGGTGCTTGtttgacgtgtgtgtgtgttgtgccaAAGAAAACACTCAGTTTTTCTGTCTGACTGAAATGGATTGTGAACCACTGCCAGGTCTGGAGAGGCTTCAGCAGGACGAAGAGACTTTGAGCACGCTCTCCAAAACACAGAGGTAAATCCCTAACAAACGTGTCGGTAAAGTGTTCCCGCCTGTCTCCACTAAGCTTCTTCTCATGCAGTATCTAAAATTAAACACCTCCTTTGAAAGTGGATGATCTGACCACAAATTTCACTTTCCTGTGAAGGCATTGTCTGGTCTTGGAAGTTTCTCCGGCATGTTCACCTCCCTTAACTTAactccttgtttgttttcttgcaccTTATTTGTGTAAGGGTGTTTCC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120367 lncRNA upstream 120385 5865044 ~ 5919123 (+) True G96543
TU120332 lncRNA upstream 284158 5755083 ~ 5755350 (+) True G96513
TU120329 lncRNA upstream 286253 5752168 ~ 5753255 (+) True G96512
TU120221 lncRNA upstream 574074 5432605 ~ 5465434 (+) False G96420
TU120405 lncRNA downstream 4722 6051398 ~ 6064774 (+) True G96572
TU120426 lncRNA downstream 70939 6117615 ~ 6118160 (+) True G96591
TU120528 lncRNA downstream 224661 6271337 ~ 6273388 (+) True G96668
TU120531 lncRNA downstream 228692 6275368 ~ 6275601 (+) True G96671
TU120568 lncRNA downstream 332095 6378771 ~ 6385567 (+) True G96697
AMCG00015253 mRNA upstream 4017 6027825 ~ 6035491 (+) True AMCG00015253
AMCG00015255 mRNA upstream 21266 6005307 ~ 6018242 (+) True AMCG00015255
AMCG00015252 mRNA upstream 67393 5959682 ~ 5972115 (+) True AMCG00015252
AMCG00015245 mRNA upstream 228579 5798493 ~ 5810929 (+) True AMCG00015245
AMCG00015246 mRNA upstream 251137 5772857 ~ 5788371 (+) True AMCG00015246
AMCG00015262 mRNA downstream 98135 6144811 ~ 6157310 (+) True AMCG00015262
AMCG00015264 mRNA downstream 202486 6249162 ~ 6257319 (+) True AMCG00015264
AMCG00015265 mRNA downstream 240909 6287585 ~ 6297209 (+) True AMCG00015265
AMCG00015263 mRNA downstream 256607 6303283 ~ 6309661 (+) True AMCG00015263
AMCG00015268 mRNA downstream 264290 6310966 ~ 6312632 (+) True AMCG00015268
TU120220 other upstream 575391 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 605486 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 647785 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1017456 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1159612 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 950957 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 950957 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1368693 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1904134 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2027505 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile