RNA id: AMCG00015255


Basic Information

Item Value
RNA id AMCG00015255
length 3036
RNA type mRNA
GC content 0.57
exon number 24
gene id AMCG00015255
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6005307 ~ 6018242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAAAAAGGTGTCAGAGCCCAGGAAAGAGAGAGTGTTGGAGGCAAGGCACATGACTGAGAGGGAGGCAAGGgatTCGTACGAGGTGTTTGTGGAGCTGGAGAGGACAGAGAATGGCGAGATGGATGCCAAgatcaagaagaagaagaagcagaagaagaaggagagaatgGAGAATATGAAGAAAGAAATGGAcattgtgagagagagggggaagtgGGGGGAagtgatggagggagggagggagggaGATGACCACGAGATCACAATAGAAGAGCTGGAGATGAAATACACAACCAATGTCACCAAGggcATGTCCAGCACCTTGGTCGCCCAGATTCTGGAGCGGGACGGTCCCAATGAGCTAAAGCCACCCAAGGGTACGCCGGAGTACATCAAGTTTGCCCGGCAGCTCGCAGGAGGGCTGCAGTGCCTGATGTGGGTGGCGGCTGCCATCTGCTTCATCGCCTTTGGCATCGAGATGGCACAGGGCAGCCTGACCAGCGACGATGACTTGTATCTTGCCATCACCCTAATCGCTGTTGTGGTTGTCACCGGCTGTTTCGGCTACTACCAAGAGTTCAAAAGCACCAACATCATTGCAAGCTTCAAGAACCTGGTGCCACAGCAAGCCACAGTGATTCGGGATGGCCAGAAGAACCAGATCAATGCCAACCAGCTGGTAGTGGGTGACCTCGTAGAGATCAAGGGGGGTGACAGGGTGCCCGCAGATGTGCGCATCATCACCTCACAGAGCTGCAAGGTTGATAACTCCTCCCTTACAGGGGAGTCAGAGCCACAGACTCGCAGCCCAGAGTGCACACACGAGAACCCCCTGGAAACTCGCAACATCGCCTTCTTCTCCACCACCTGCCTGGAGGGGGTGGCGACGGGTGTGATCATCAACACGGGCGACCGCACCATCATCGGCCGCATTGCCACCCTGGCGTCAGGCGTGGGAAACGAGAAAACGCCCATCGCCATCGAGATCGAGCACTTTGTCGACATCATCGCTGGCCTGGCCATCTTCTTCGGAGCCACCTTCTTCGTGGTTGCCATGGTGATTGGCTACCAGTTCCTGGAAGCCATGATCTTCTTCATGGCCATCGTGGTGTGTCTGTCCCTGACTGCCAAGCGCCTGGCCAGAAAAAACTGTGTGGTGAAGAACCTGGAAGCTGTGGAGACCCTGGGCTCAACCTCGGTCATCTGCTCCGACAAAACCGGAACGCTGACCCAGAACCGGATGACAGTGGCCCACCTGTGGTTCGACAATCAGGTCCACGCAGCCGACACCACTGAGGACCAGTCCGgTCAGAGTTTTGACCAGTCCTCTGAGACGTGGCGAGCTCTGAGCCGAGTAGCCGCACTGTGTAACCGTGCTGTCTTCAAACCCGACCAGGAGTCTGTGCCCATCCCCAAGaggtTGGTGGTGGGTGATGCCTCAGAGACGGCGCTGCTCAAGTTCACAGAGCTGACGATGGGCAATGTGATGGACTACAGGAACCGCTTCAATAAAGTCTGTGAGCTGCCTTTCAACTCCACAAACAAGTTCCAGGTGTCAATCCACGAGCTGGAGGACCCCCTGGACCTGCGCTACCTGCTGGTGATGAAGGGCGCCCCCGAGAGGATCCTGGAGCGCTGCAGCACCATCCTCATCAAGGGCCAGGAGCTGCCGCTGGACGAGCAGTGGAGCGAGGCCTTCCAGACGGCCTACATGGACCTGGGGGGCCTGGGGGAGAGAGTCTTGgGGTTCTGTCATCTGTACCTGAATGAGAAGGAGTACCCGCGTGGCTACCACTTCGACTCTGACGAAATGAATTTCCCCACCAGTGGGCTGTGCTTTGCCGGGCTGATCTCCATGATTGACCCACCCCGCGCCACTGTGCCCGACGCCGTGATGAAGTGCCGAACAGCTGGGATCAGGGTTGTCATGGTGACAGGGGACCACCCAATCACAGCCAAGGCAATTGCAGCAAATGTGGGCATCATCTCCGAGGGCAGCGAGACTGACATGACCTCGGACGAGCTGGACGATGCCCTGCGCTGCCACCCTGAGATGGTGTTCGCCCGCACCTCCCCCCAGCAGAAACTCATCATTGTGGAGAGCTGCCAGAGACTGAACATCCCTGAGCTCACCCCCTACCTCATCTACATCACCGTCAGCGTGCCCTTGCCCCTGGGGTGCATCACCATCCTCTTCATCGAGCTGGCCACAGACATCAAGGCAGAGAGTGACATCATGCACCTGAAACCGAGGAACCCCCGCAGAGACCGACTGGTCAACGAGGCTCTGGCCGTCTACTCCTACTTCCAGATagACTACTTCACGGCAATGGCTCAGGAGGGCTGGTACCCCCTACTGTGCGTGGGGCTGCGCTCTTACTGGGAGAACACACACCTGCAGGATCTGCAGGACAGCTACGGCCAGGAATGGACGTTCAGTCAGCGCCTGTACCAGGAGTACACCTGCTACACTGTGTTCTTCGTCAGTATCGAGATCTGCCAGATCTCTGACGTCCTGATCAGGAAAACGCGTCGTTTGTCTGTCTTCCAGCAGGGCTTCTTCAGGAATAAGGTGCTGGTGTCTGCCATTGTGTTCCAGCTGTGTCTGGGCAACTTGCTCTGCTACTGCCCAGGGATGCCCAACATCTTCAATTTCATGCCCATAAGAGTGCAGTGGTGGTTTGTCCCGGTTCCTTACGGGATCCTGATATTTGTTTACGACGAGATCAGGAAACTGGGAGTGCGCAGACACCCAGGCAGTGAGTTGGTGGGACCAGGAGCTGTACTACTGAAGCAAGACTCCTCAGACCTCCAGCCTCTGTCCTCTCCACAAAAGCCCCCTGGACCACACCGCCCCCTACTGCCCAGAGGCTGTAATGGATGGTGCACGGAAGCGAGCAGCCAAAAAGTGCTGAGTAACAGGAAACGGCTGGAGGCGGAGCTGGCGCTGCGCACTGGGCTGTGTGCGGGTCTCCACCCGGATCTCAGCGGGGCCGGCCGGGCTGTCAGTGCAGGAGAGGGCGGGGACTGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120367 lncRNA upstream 86184 5865044 ~ 5919123 (+) True G96543
TU120332 lncRNA upstream 249957 5755083 ~ 5755350 (+) True G96513
TU120329 lncRNA upstream 252052 5752168 ~ 5753255 (+) True G96512
TU120221 lncRNA upstream 539873 5432605 ~ 5465434 (+) False G96420
TU120401 lncRNA downstream 7103 6025345 ~ 6067602 (+) True G96568
TU120405 lncRNA downstream 33156 6051398 ~ 6064774 (+) True G96572
TU120426 lncRNA downstream 99373 6117615 ~ 6118160 (+) True G96591
TU120528 lncRNA downstream 253095 6271337 ~ 6273388 (+) True G96668
TU120531 lncRNA downstream 257126 6275368 ~ 6275601 (+) True G96671
AMCG00015252 mRNA upstream 33192 5959682 ~ 5972115 (+) True AMCG00015252
AMCG00015245 mRNA upstream 194378 5798493 ~ 5810929 (+) True AMCG00015245
AMCG00015246 mRNA upstream 216936 5772857 ~ 5788371 (+) True AMCG00015246
AMCG00015242 mRNA upstream 283642 5713705 ~ 5721665 (+) True AMCG00015242
AMCG00015235 mRNA upstream 322661 5681003 ~ 5682646 (+) True AMCG00015235
AMCG00015253 mRNA downstream 9583 6027825 ~ 6035491 (+) True AMCG00015253
AMCG00015254 mRNA downstream 21266 6039508 ~ 6046676 (+) True AMCG00015254
AMCG00015262 mRNA downstream 126569 6144811 ~ 6157310 (+) True AMCG00015262
AMCG00015264 mRNA downstream 230920 6249162 ~ 6257319 (+) True AMCG00015264
AMCG00015265 mRNA downstream 269343 6287585 ~ 6297209 (+) True AMCG00015265
TU120220 other upstream 541190 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 571285 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 613584 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 983255 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1125411 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 979391 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 979391 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1397127 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1932568 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2055939 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile