RNA id: TU120468


Basic Information

Item Value
RNA id TU120468
length 592
lncRNA type sense_over
GC content 0.47
exon number 6
gene id AMCG00015257
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6025368 ~ 6072125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGAGTTGCCGGAGCTGCTGTGTTGTGCCTGTCAACAAAGGGGAGGTGACTGGCTTTCTAGAAGGGACAAAGTAAAACCTTTATGCTGTCTTGAGTTCCTGCTCAGGTTCTTTTTGCACCTGCATCTGAGTGTCTTCCTGTGAGCTGGTCTCTGCCCAGTCAGCTTTTACACACCATGTCTCAGCTCAGCATTCTACTTCTGTTGACAGTCTTATCAACATACTGCACAGAAGTGACAGCAAATGCTTTTACGTATGGGGACTCGTGCAAATGGGGTGGGAAAAAAGCTGGCAAATGAGCTAAATCCAACCGGACTGATTCTGATTCGCTGTCGCCACAGGGACAAAGATGGGAACGGTGGTGGGGTTTGGTATGGAGGGTGGGGCGCAAATAGAATCAGCTCTTTCCATTGGAAGCTGTTCTGTCAGGGAGGGGTCTTTCTCTCAGGCCCCACCCTCTCCCAGCCACACTGGATATTGACCAGGATTCTCCCTTTCTAATGGTTTCAAATTTATGAACTCagcaattaattttgtttataatgaGAAATGAATGTCCAATAAAGACGAACGAAGTGTCATGCCCAACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120450 lncRNA downstream 32838 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA downstream 92795 5937423 ~ 5972170 (-) True G96609
TU120354 lncRNA downstream 272351 5792403 ~ 5792614 (-) True G96532
TU120352 lncRNA downstream 276118 5786397 ~ 5788847 (-) True G96531
TU120290 lncRNA downstream 507460 5557251 ~ 5557505 (-) True G96479
TU120496 lncRNA upstream 46542 6118621 ~ 6119653 (-) True G96642
TU120497 lncRNA upstream 48575 6120654 ~ 6121002 (-) True G96643
TU120510 lncRNA upstream 85024 6157103 ~ 6223629 (-) True G96650
TU120513 lncRNA upstream 156435 6228514 ~ 6228776 (-) True G96653
TU120566 lncRNA upstream 282941 6355020 ~ 6362409 (-) True G96696
AMCG00015256 mRNA downstream 906 6049524 ~ 6064059 (-) True AMCG00015256
AMCG00015258 mRNA downstream 56721 5975211 ~ 6008244 (-) True AMCG00015258
AMCG00015251 mRNA downstream 151028 5900594 ~ 5913937 (-) True AMCG00015251
AMCG00015247 mRNA downstream 184775 5865044 ~ 5880190 (-) True AMCG00015247
AMCG00015250 mRNA downstream 215536 5845176 ~ 5849429 (-) True AMCG00015250
AMCG00015260 mRNA upstream 6144 6078223 ~ 6083491 (-) True AMCG00015260
AMCG00015259 mRNA upstream 12798 6084877 ~ 6097018 (-) True AMCG00015259
AMCG00015261 mRNA upstream 52021 6124100 ~ 6144724 (-) True AMCG00015261
AMCG00015267 mRNA upstream 296675 6368754 ~ 6382439 (-) False AMCG00015267
AMCG00015271 mRNA upstream 338576 6410655 ~ 6419481 (-) False AMCG00015271
TU120487 other downstream 806 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 307856 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 991159 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 1059453 4985572 ~ 5005512 (-) False AMCG00015211
TU120625 other upstream 305811 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 626778 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 845687 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1714008 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 2059228 8131307 ~ 8134115 (-) False G97411

Expression Profile