RNA id: AMCG00015263



Basic Information


Item Value
RNA id AMCG00015263
length 927
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00015263
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6303283 ~ 6309661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGACTCGCACTGTCAAAATGAAACTGCTCGTGACGCTGCTGATCTGCGCGCAGATGTATATCCCAGTTCTCATGTGTGAACACTGTACTGAGGGCAAGGACTGCAAACCGCAGCACTGCACCAGCACAGAATTGGTCTGTGCTGCCAGCACCATCTCTGAGCCGCCAAATAAAGCAACGACTAACAACCATGAGTGTTTCACTTGTGATACAGAAGTCTGTAACACGACGCTGAAATGTCAGGGGGAGGAGGACCACTGTTTTAAAACCACTGTTTTTGAAAAAGGCAAAACGGTAGCTGCAAAGGGATGTGTTACCAGCAACCTCTGCGCAGAGCGGTCGTCAACAATCGTTGGTAGAGCACTCGCCATGGATCTCAACTGCTGCAAAGGAAACCTGTGCAACAACGCCAAGCGTGCTGGACAGAGCATCTTCCTCCTACTGGCGTCTCTCTCACCCATTGCCCTCTTCCTCTGAGCAAAGGGCGCTCAGACACCGCTCTCTCCACTCACTGCCCGCTTCTGCAGGGAGTATTTTAATCGTGACTAATGACGGGCCATTTCAACAGGCCGTAATCAAGGTGTGTCATTCCAGTGTTGTAGGCAAGTATGGGTGCAAAAGATTAATAGTTGAGATGCAATCAATTAGAGGTAGAGCAAGGAGCAGCAGAGATATGGTAGATAACCAGTCTTTTatattatgaatgcatttattaactCTGGCAGTGCAGTTATTCTTTCTGTGATCGTTCTATCAAGTGTAATCTCTAACAATCTCCAGGGGGTATGGGaaactaaatataattattatttacatcataCTAATACCtattgtaaaacattaatttgattaaagtttaaatcaaatgtatgtataattcgTGTGGTATTTCAAgttcaacaataataaaaatatatgtacatttta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120531 lncRNA upstream 27682 6275368 ~ 6275601 (+) True G96671
TU120528 lncRNA upstream 29895 6271337 ~ 6273388 (+) True G96668
TU120426 lncRNA upstream 185123 6117615 ~ 6118160 (+) True G96591
TU120401 lncRNA upstream 235681 6025345 ~ 6067602 (+) True G96568
TU120568 lncRNA downstream 69110 6378771 ~ 6385567 (+) True G96697
TU120586 lncRNA downstream 119928 6429589 ~ 6431235 (+) True G96710
TU120595 lncRNA downstream 146171 6455832 ~ 6490523 (+) False G96716
TU120593 lncRNA downstream 178607 6488268 ~ 6490523 (+) True G96716
TU120620 lncRNA downstream 380528 6690189 ~ 6691799 (+) True AMCG00015277
AMCG00015265 mRNA upstream 6074 6287585 ~ 6297209 (+) True AMCG00015265
AMCG00015264 mRNA upstream 45964 6249162 ~ 6257319 (+) True AMCG00015264
AMCG00015262 mRNA upstream 145973 6144811 ~ 6157310 (+) True AMCG00015262
AMCG00015254 mRNA upstream 256607 6039508 ~ 6046676 (+) True AMCG00015254
AMCG00015253 mRNA upstream 267792 6027825 ~ 6035491 (+) True AMCG00015253
AMCG00015268 mRNA downstream 1305 6310966 ~ 6312632 (+) True AMCG00015268
AMCG00015266 mRNA downstream 34136 6343797 ~ 6344918 (+) True AMCG00015266
AMCG00015269 mRNA downstream 76005 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015277 mRNA downstream 376690 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015276 mRNA downstream 406079 6715740 ~ 6729138 (+) True AMCG00015276
TU120220 other upstream 839166 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 869261 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 911560 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1281231 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1423387 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 687972 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 687972 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1105708 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1641149 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1764520 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile