RNA id: AMCG00015267


Basic Information

Item Value
RNA id AMCG00015267
length 951
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00015267
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6368754 ~ 6384620 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAACTGTAACACTGTCTGCTGCAGTAGGGCTGCCCAGCTCCCCCGTGGTGGTGGTTCCAGGCAGTGACGTCACCCTCAGTTGCTCTTTCCACTATAGTGAAGCTGATGACCCTGGCAGAGTGGTGCTGACCTGGCAGCGAGGTCATGAGGTTGTGCACAGTTTCTATTACGGCACAGATCAGCTGAAGGAACAAAGCCCCGCCTACAGGGGGCGCACACAGGTGTTCCCAGAGCAGGTGGCCGTGGGTAACGCCTCTCTGAGGCTGAGAGACGTGCAGGGAAGTGACCAGGGCACCTACACCTGTGCTGTGGCCAATGAACAAGGAAGCAGCCAGAGAGACCTGCAGATCCTAGTGGCAGCGGAATACGAAGAGCCTTGTTTAGTGATCAGCATGTCTAAGCATCCTGGCCTCCTCATGCTGGAGTACTGTGCTCAGGGATACCCGCAGGCCACTGTGCTCTGGCTGAACCAATCTGGAGGTGACATCACGGAGCGCAGCCACACCAGCCAATGGGAGAGCAGGGGAGGGTTGCTGGAGCTGTGCAGCCGTCTGACAGTGGAACAACTGGCCAATCAGAGCTACACCTTCCAGCTGAGCAACCCTGTGGTCAATCAAACCGTCAGGAGGATTGTGGCCATAGCCAGCGGAGGCAAGCCTCGTTTAGAGTTTGGAATAACTGCAGCCTGTAGGCCAATCATCATCACCCTTGTCTCTTCTGAGGGCTTTCCACAGCCCACCCTGGTGTGGGGGAACATGACCGGAAGTGACATCACCAATCAGAGCTGCACCACTATGCTCCTGGACAGCCGGGGGTGCTACAAAGTGCAGAGTGTACTGTCAGTGACTccgactcacacacacaatctcactGTGCAGCTCATACTCGCCGTTCTCAACCAGAATCTCAGTCGCTCCATCATGCTTCACCCACAGGATGTGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120566 lncRNA downstream 6345 6355020 ~ 6362409 (-) True G96696
TU120513 lncRNA downstream 139978 6228514 ~ 6228776 (-) True G96653
TU120510 lncRNA downstream 145125 6157103 ~ 6223629 (-) True G96650
TU120497 lncRNA downstream 247752 6120654 ~ 6121002 (-) True G96643
TU120496 lncRNA downstream 249101 6118621 ~ 6119653 (-) True G96642
TU120631 lncRNA upstream 28208 6410647 ~ 6412709 (-) True AMCG00015271
TU120734 lncRNA upstream 488023 6870462 ~ 6871498 (-) True AMCG00015283
TU120743 lncRNA upstream 508796 6891235 ~ 6892166 (-) True AMCG00015285
TU120746 lncRNA upstream 512641 6895080 ~ 6896427 (-) False AMCG00015285
TU120800 lncRNA upstream 604961 6987400 ~ 7063937 (-) True G96873
AMCG00015261 mRNA downstream 224030 6124100 ~ 6144724 (-) True AMCG00015261
AMCG00015259 mRNA downstream 271736 6084877 ~ 6097018 (-) True AMCG00015259
AMCG00015260 mRNA downstream 285263 6078223 ~ 6083491 (-) True AMCG00015260
AMCG00015257 mRNA downstream 296629 6064969 ~ 6072125 (-) True AMCG00015257
AMCG00015256 mRNA downstream 304695 6049524 ~ 6064059 (-) True AMCG00015256
AMCG00015271 mRNA upstream 28216 6410655 ~ 6419481 (-) False AMCG00015271
AMCG00015270 mRNA upstream 48179 6430618 ~ 6440642 (-) True AMCG00015270
AMCG00015272 mRNA upstream 106003 6488442 ~ 6501219 (-) True AMCG00015272
AMCG00015273 mRNA upstream 132927 6515366 ~ 6525807 (-) True AMCG00015273
AMCG00015275 mRNA upstream 207754 6590193 ~ 6591000 (-) True AMCG00015275
TU120487 other downstream 304595 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 611645 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 1294948 5054901 ~ 5073806 (-) False AMCG00015211
TU120090 other downstream 1363242 4985572 ~ 5005512 (-) False AMCG00015211
TU120659 other upstream 316418 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 535327 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1403648 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 1748868 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 2027548 8409987 ~ 8411882 (-) True G97455

Expression Profile